Locus 7715

Sequence ID 3R_DroMel_CAF1
Location 20,718,750 – 20,718,845
Length 95
Max. P 0.903673
window12446

overview

Window 6

Location 20,718,750 – 20,718,845
Length 95
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 74.78
Mean single sequence MFE -15.52
Consensus MFE -6.82
Energy contribution -7.42
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.44
SVM decision value 1.03
SVM RNA-class probability 0.903673
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20718750 95 + 27905053
UCUUUUGCGUUAUUGCAAAAAAAAAGAACCCAUAAG-CUAUGCAAACUAUUCUAA-GGCGCAUAAAAAGUUAUUUAUGUGCUUAAAGUAUAAACAUA
..(((((((....)))))))................-.(((((...((......)-)(((((((((......))))))))).....)))))...... ( -17.80)
>DroSec_CAF1 15055 79 + 1
UCUUUUGCAUUUUGGCAAA---AAAGAACCCAUA--------------AUUCUAA-GCGGCAUAAAAAAUUAUUUAUGUGCUUGAAGUAUAAACAUA
..((((((......)))))---)........(((--------------.(((.((-(((.((((((......)))))))))))))).)))....... ( -15.10)
>DroSim_CAF1 15952 79 + 1
UCUUUUGCAUUUUGGCAAA---AAAGAACCCAUA--------------AUUCUAA-GGCGCAUAAAAAGUUAUUUAUGUGCUUGAAGUAUAAACAUA
..((((((......)))))---)........(((--------------.(((..(-((((((((((......)))))))))))))).)))....... ( -17.00)
>DroEre_CAF1 15989 76 + 1
ACGUUUGCAUUCUUACAAA---AAA------------------UAACUAUUCUAAUGGCGCAUAAAAACAUAUUUAUGUGGUUGAACUAUAAACAUA
..(((((..(((..((...---...------------------...((((....))))((((((((......)))))))))).)))...)))))... ( -10.30)
>DroYak_CAF1 16251 92 + 1
AAGUUUGCAUUUUUGCACA---AAA--ACCCAUAAACCCAUGCUAACUAUUCUAAGGGCGCAUAAAAACACAUUUAUGUGGCUGAAGUAUAAACAUA
..(((((.(((((.((...---...--.........(((................)))((((((((......)))))))))).))))).)))))... ( -17.39)
>consensus
UCUUUUGCAUUUUUGCAAA___AAAGAACCCAUA__________AACUAUUCUAA_GGCGCAUAAAAACUUAUUUAUGUGCUUGAAGUAUAAACAUA
...(((((......))))).......................................((((((((......))))))))................. ( -6.82 =  -7.42 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:50 2006