Locus 771

Sequence ID 3R_DroMel_CAF1
Location 2,677,052 – 2,677,168
Length 116
Max. P 0.797646
window1227

overview

Window 7

Location 2,677,052 – 2,677,168
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.65
Mean single sequence MFE -15.98
Consensus MFE -15.10
Energy contribution -15.30
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.28
Structure conservation index 0.94
SVM decision value 0.61
SVM RNA-class probability 0.797646
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2677052 116 + 27905053
ACCAUAUAAAAGUAUA----GAAAAAAACAAAUGAUGGAAAAUAAAUGAAAAACUAAAAAAAAAAAAUCAUAAGAGAGACGCCUGCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU
.((((......((...----.......)).....)))).........................................((((.((((..(((((.......)))))..)))).)))).. ( -17.40)
>DroSec_CAF1 36477 114 + 1
AGCAUAUAAA-AUAUA----GAAAAAAACAAAAGAUGGAAAAUAAAUGAAAAACUAAAAAA-AGAAAUCAUAAGAGAGACGCCUGCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU
..........-.....----.........................................-.................((((.((((..(((((.......)))))..)))).)))).. ( -15.80)
>DroSim_CAF1 29675 112 + 1
AGCAUAUAAA-GUAUA----GAAAAAA--AAAAGAUGGAAAAUAUAUGAAAAACUAAAAAA-AGAAAUCAUAAGAGAGACGCCUUCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU
..........-.....----.......--...............(((((....((......-))...))))).......((((..(((..(((((.......)))))..)))..)))).. ( -15.10)
>DroYak_CAF1 36960 112 + 1
AGCAUAUAAAAGUAUA----GAAAAAA-AAAAAUUUGG-AAAUAAAUGAAAAACUAAAA-A-ACAAAUCAUAAAAGAGACGCCUGCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU
................----.......-..........-....................-.-.................((((.((((..(((((.......)))))..)))).)))).. ( -15.80)
>DroAna_CAF1 24709 118 + 1
AGCAAAUAAAAAUAUGUUUAAAAAAAG-AAGAAGAUGGAAAAUAAAUGAAAAACUAAAAAA-AGAAAUCAUAAGAGAGACGCCUGCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU
...........................-.................................-.................((((.((((..(((((.......)))))..)))).)))).. ( -15.80)
>consensus
AGCAUAUAAAAGUAUA____GAAAAAA_AAAAAGAUGGAAAAUAAAUGAAAAACUAAAAAA_AGAAAUCAUAAGAGAGACGCCUGCGUGUACUUCUGUAAUUGGAGUUGAUGUUGGCGAU
...............................................................................((((.((((..(((((.......)))))..)))).)))).. (-15.10 = -15.30 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:40 2006