Locus 7689

Sequence ID 3R_DroMel_CAF1
Location 20,640,456 – 20,640,571
Length 115
Max. P 0.500000
window12403

overview

Window 3

Location 20,640,456 – 20,640,571
Length 115
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 77.57
Mean single sequence MFE -45.94
Consensus MFE -26.01
Energy contribution -26.02
Covariance contribution 0.00
Combinations/Pair 1.40
Mean z-score -1.53
Structure conservation index 0.57
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20640456 115 + 27905053
UGUGGUCUUUAAUCCUGACGCAAUUAUCGAAAAACCGCGCAGGCAACGCGGCGACAAAAACACUGAAGGUUGCUGCGGUGGCGCUGCGAUGGCGGCGCUGGAAGCCGAAGUCCAG
..(((.((((.....((.(((...............)))))(((..(((((((((.............)))))))))..((((((((....))))))))....))))))).))). ( -43.78)
>DroPse_CAF1 9021 115 + 1
UGUAGUCUUCAAUCCGGAUGCCAUCAUCGAGUCGCCUCGAAAACGCCGAGGGGCCAAACCCGCAGAAGGCUGCUGUGGUGGCGCGGCGAUGGCGGCGCUCGAGGCGGAGGUGGCA
....((((.......))))((((((......(((((((((...(((((.(((......)))((((....))))..)))))((((.((....)).))))))))))))).)))))). ( -53.20)
>DroGri_CAF1 8974 112 + 1
UGUGGUCUUCAAUCCCGAUGCAGUUAUUCAAGCACCACGCAAACGACAAGGUGAUAAGUCUAC---AGGUUGUUGUGGUGGGGCAGCGAUGGCUGCUCUGGAGGCCGAGUUGGAU
..(((((((((.....................(((((((...(((((...((((....)).))---..))))))))))))(((((((....))))))))))))))))........ ( -39.30)
>DroEre_CAF1 8974 115 + 1
UGUGGUUUUCAAUCCUGAUGCAAUCAUCGAAAAACCGCGCAGGCAACGCGGCGACAAAAACACUGAAGGUUGCUGCGGUGGCGCUGCGAUGGCAGCCCUUGAAGCCGAGGUCCAG
.((((((((...((..((((....))))))))))))))((((((..(((((((((.............)))))))))...)).))))..(((....(((((....))))).))). ( -41.02)
>DroYak_CAF1 8085 115 + 1
UGUGGUCUUCAAUCCUGAUGCGAUCAUCGAAAAACCGCGCAGGCAACGCGGCGACAAAAACACUGAAGGUUGCUGCGGUGGCGCUGCGAUGGCGGCCCUCGAAGCCGAGGUCCAG
.((((((.(((....)))...)))))).......((((((((((..(((((((((.............)))))))))...)).))))).))).((.(((((....))))).)).. ( -45.62)
>DroPer_CAF1 9234 115 + 1
UGUAGUCUUCAAUCCGGAUGCCAUCAUCGAGUCGCCUCGAAAACGCCGUGGGGCCAAACCCACAGAAGGCUGCUGUGGUGGCGCGGCGAUGGCGGCGCUCGAGGCGGAGGUGGCA
....((((.......))))((((((......(((((((((...(((((((((......))))).....(((((((((....))))))...))))))).))))))))).)))))). ( -52.70)
>consensus
UGUGGUCUUCAAUCCUGAUGCAAUCAUCGAAAAACCGCGCAAACAACGCGGCGACAAAAACACUGAAGGUUGCUGCGGUGGCGCUGCGAUGGCGGCGCUCGAAGCCGAGGUCCAG
.(((((((((......((((....))))......(((((.......))))).............)))))))))..((((((((((((....))))))))....))))........ (-26.01 = -26.02 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:03 2006