| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,674,396 – 2,674,488 |
| Length | 92 |
| Max. P | 0.707936 |
| Location | 2,674,396 – 2,674,488 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 81.48 |
| Mean single sequence MFE | -39.07 |
| Consensus MFE | -21.32 |
| Energy contribution | -20.82 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2674396 92 - 27905053 GCGUCCGCAAAGGUAGUUUC--AGCACAUGCC--UGAGAGCGAGCGAGAUGGCGGA----GCGGCGCAAUGCCCGUUGUCUCUCUCGCACACUUUUCGAA .....((.((((((..((((--(((....).)--)))))(((((.((((..((((.----(((......)))))))..)))).)))))..)))))))).. ( -39.40) >DroSec_CAF1 33829 92 - 1 GCGUCCGCAAAGGUAGUUUC--AGUACAUGCC--UGAGAGCGAGCGAGACGGCGGA----GCGGCGCAAUGCCCGUUGUCUCUCUCGCACACUUUUCGAA .....((.((((((..((((--((.......)--)))))(((((.((((((((((.----(((......))))))))))))).)))))..)))))))).. ( -40.30) >DroSim_CAF1 26930 92 - 1 GCGUCCGCAAAGGUAGUUUC--AGCACAUGCC--UGAGAGCGAGCGAGACGGCGGA----GCGGCGCAAUGCCCGUUGUCUCUCUCGCACACUUUUCGAA .....((.((((((..((((--(((....).)--)))))(((((.((((((((((.----(((......))))))))))))).)))))..)))))))).. ( -41.00) >DroEre_CAF1 27083 92 - 1 GCGCCCGCAAAGGUAGUUUC--AGCACUUGCC--UAAGAGUGAACGAGAUGGCAGA----GCGGCGCAAUGGCCGUUAUCUCUCUCGCACACUUUUCGAA ((....))..(((((((...--...)).))))--)(((((((..(((((.((...(----(((((......))))))..)).)))))..))))))).... ( -30.10) >DroYak_CAF1 34230 92 - 1 GCGUUCGCAAAGGUAGUUUC--GGCAUUUGCC--CAAGAGCGAGCGAGACGGCAGA----GCAGCGCAAUGGCCGUUGUCUCUCUCGCUCACUUUUCGAA ...((((.((((((......--(((....)))--...(((((((.((((((((.(.----.((......)).).)))))))).))))))))))))))))) ( -37.40) >DroAna_CAF1 21911 98 - 1 GCGCCCACAAAGGUAGCCCGUGGGGCUGUGGCAGCGGGUGCGAGUGAGAUGGGGCAAACGGUGGCGCACACCCAGCUAUCUCACUCGCACACU--UCGAA .((((((((......((((...)))))))))..))).((((((((((((((((.....)((((.....))))...)))))))))))))))...--..... ( -46.20) >consensus GCGUCCGCAAAGGUAGUUUC__AGCACAUGCC__UGAGAGCGAGCGAGACGGCGGA____GCGGCGCAAUGCCCGUUGUCUCUCUCGCACACUUUUCGAA .....((.((((((.(((....)))..............(((((.((((((((.......((...)).......)))))))).)))))..)))))))).. (-21.32 = -20.82 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:36 2006