| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,568,444 – 20,568,535 |
| Length | 91 |
| Max. P | 0.617028 |
| Location | 20,568,444 – 20,568,535 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 73.01 |
| Mean single sequence MFE | -34.88 |
| Consensus MFE | -22.39 |
| Energy contribution | -24.53 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20568444 91 - 27905053 AUCCAGCUGGAAGGUGGCAUUGAACUUGGUCGGCCCUGAGUUGGCCGCA-CCGGAAACGGAAGG------------------GGGGUCGUGAACCGGGCUGGGCGAGUCA ..(((.(.....).)))...(((.((((.(((((((.(...(((((.(.-(((....)))....------------------).)))))....).))))))).))))))) ( -37.00) >DroGri_CAF1 31268 76 - 1 GUCCAGUUGAAAAGUCGCAUUGUAUUUUGCCGGCACUGAUA---CUGCAUCCGCUAACAUAAGC------------------------------UCGUCCUC-CUUUUUC ........((((((..(((..(((((.((....))..))))---))))....(((......)))------------------------------........-)))))). ( -10.50) >DroSec_CAF1 22721 91 - 1 CUCCAGCUGGAAGGUGGCAUUGAACUUGGUCGGCCCCGAGUUGGCCGCA-CCGGAAACGGAAGC------------------GGGGUCAUGAACCGGACUGGGCGAGUCA .(((((((((...(((((....(((((((......)))))))..((((.-(((....)))..))------------------)).)))))...)))).)))))....... ( -38.60) >DroSim_CAF1 22875 91 - 1 AUCCAGCUGGAAGGUGGCAUUGAACUUGGUCGGCCCCGAGUUGGCCGCA-CCGGAAACGGAAGC------------------GGGGUCAUGAACCGGACUGGGCGAGUCA .(((((((((...(((((....(((((((......)))))))..((((.-(((....)))..))------------------)).)))))...)))).)))))....... ( -38.80) >DroEre_CAF1 22627 103 - 1 AUCCAGCUGGAAUGUGGCAUUGAACUUGGUCGGCCCCGAGUUGGCAGGA-CCGGAAACGGAAGCGG------AAGCGGGAGCGGGGUCGUGAACCGGACUGGGAGAGUCC .(((((((((.....(((..........)))(((((((..((.......-(((....)))..((..------..)).))..))))))).....)))).)))))....... ( -40.90) >DroYak_CAF1 23308 109 - 1 AUCCAGCUGGAAGGUGGCAUUGAACUUGGUCGGCCUCGAGUUGGCCGCA-CCGGAAACGGAAGCGGAGAUGGAGGCGGAGGCGGGGUCGUGAACCGGACUGGGCGAGUCA .(((....))).(((..(((.((.(((.(((.(((((..(((..((((.-(((....)))..)))).))).)))))...))).)))))))).))).((((.....)))). ( -43.50) >consensus AUCCAGCUGGAAGGUGGCAUUGAACUUGGUCGGCCCCGAGUUGGCCGCA_CCGGAAACGGAAGC__________________GGGGUCGUGAACCGGACUGGGCGAGUCA .(((((((((...(((((....(((((((......))))))).)))))..(((....))).................................)))).)))))....... (-22.39 = -24.53 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:42 2006