Locus 766

Sequence ID 3R_DroMel_CAF1
Location 2,672,524 – 2,672,632
Length 108
Max. P 0.760989
window1221

overview

Window 1

Location 2,672,524 – 2,672,632
Length 108
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 90.72
Mean single sequence MFE -37.65
Consensus MFE -30.99
Energy contribution -31.08
Covariance contribution 0.10
Combinations/Pair 1.06
Mean z-score -2.21
Structure conservation index 0.82
SVM decision value 0.50
SVM RNA-class probability 0.760989
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2672524 108 - 27905053
GUCGUAAGUGGAUGAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCAAGGGUGGGCCAAGAUCAAAG--AGCUGGAGAGCUGGCUGCAUCGAUUGCAUA
...(((((((((......)))))(((((((((.((((((((....((((((((......))))))))......((...--...))))))).))))))))))))))))... ( -39.40)
>DroSec_CAF1 32017 110 - 1
GUCGUAAGUGGAUGAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCGAGGGUGGGCCAAGAUCAAAGAGAGCUGGAGAGCUGGCUGCAUCGAUUGCAUA
...(((((((((......)))))(((((((((.((((((((....((((((((......))))))))..((.((.....)).)).))))).))))))))))))))))... ( -40.60)
>DroSim_CAF1 25094 110 - 1
GUCGUAAGUGGAUGAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCGAGGGUGGGCCAAGAUCAAAGAGAGCUGGAGAGCUGGCUGCAUCGAUUGCAUA
...(((((((((......)))))(((((((((.((((((((....((((((((......))))))))..((.((.....)).)).))))).))))))))))))))))... ( -40.60)
>DroEre_CAF1 25212 107 - 1
GUAGUAAGUGGAUGAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCGAGGGUGGGCCAAGAUCAAAG--AGCUGGAGAGCUGGCUG-CUCGAUUGCAUA
....((((((((......))))))))((((((.((.((((.(((.((((((((......))))))))...))).))))--.......((((.....)-))))))))))). ( -36.40)
>DroYak_CAF1 32439 108 - 1
GUCGUAAGUGGAUAAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCGAGGGUGGGCCAAGAUCAAAG--AGCUGGAGAACUGGCGGGUUCGAUUGCAUA
....((((((((......))))))))((((((.((.((((.(((.((((((((......))))))))...))).))))--.((..(....)..))......)))))))). ( -35.20)
>DroAna_CAF1 19738 98 - 1
--AGUAAGUGGAAGAAAUUCCACUUGAUGUAGGUCACUUUCAUUUGCCUAGAUCGCCGAGGGUGGGCCAAGAUCAAAG--AGC--------UGGUAGCCCCGAUUGCAUA
--...((((((((....))))))))(((.((((.((........)))))).)))((((.((((..((((...((...)--)..--------)))).))))))...))... ( -33.70)
>consensus
GUCGUAAGUGGAUGAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCGAGGGUGGGCCAAGAUCAAAG__AGCUGGAGAGCUGGCUGCAUCGAUUGCAUA
....((((((((......))))))))((((((.((.((((.(((.((((((((......))))))))...))).))))...((..(....)..))......)))))))). (-30.99 = -31.08 +   0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:34 2006