Locus 7657

Sequence ID 3R_DroMel_CAF1
Location 20,519,484 – 20,519,604
Length 120
Max. P 0.584288
window12360

overview

Window 0

Location 20,519,484 – 20,519,604
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 99.56
Mean single sequence MFE -36.00
Consensus MFE -35.07
Energy contribution -35.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -0.74
Structure conservation index 0.97
SVM decision value 0.10
SVM RNA-class probability 0.584288
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20519484 120 - 27905053
GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGGGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU
((((((..((((.....))))))))))...(.(((((.(((((((....(((.......))))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -37.60)
>DroVir_CAF1 1839 120 - 1
GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGAGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU
((((((..((((.....))))))))))...(.(((((.((((......(((((.......)))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -32.80)
>DroGri_CAF1 1947 120 - 1
GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGAGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU
((((((..((((.....))))))))))...(.(((((.((((......(((((.......)))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -32.80)
>DroYak_CAF1 2084 120 - 1
GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGGGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU
((((((..((((.....))))))))))...(.(((((.(((((((....(((.......))))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -37.60)
>DroAna_CAF1 2008 120 - 1
GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGGGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU
((((((..((((.....))))))))))...(.(((((.(((((((....(((.......))))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -37.60)
>DroPer_CAF1 2209 120 - 1
GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGGGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU
((((((..((((.....))))))))))...(.(((((.(((((((....(((.......))))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -37.60)
>consensus
GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGGGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU
((((((..((((.....))))))))))...(.(((((.(((((((....(((.......))))))))))))))).)......(((..(..((((((......))))))..).)))..... (-35.07 = -35.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:22 2006