Locus 765

Sequence ID 3R_DroMel_CAF1
Location 2,671,586 – 2,671,680
Length 94
Max. P 0.923977
window1220

overview

Window 0

Location 2,671,586 – 2,671,680
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 97.77
Mean single sequence MFE -12.66
Consensus MFE -11.48
Energy contribution -11.56
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.61
Structure conservation index 0.91
SVM decision value 1.16
SVM RNA-class probability 0.923977
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2671586 94 + 27905053
AUAUUAUUCCUCUUCAUCUUUUUGUGUCUUUUUUCUCACUCCCCAAACAUGCAUCUUCUUCUGCCGUGGCAACCCUCGUCACAGUUGCUGUUUG
.......................(((..........)))....((((((.(((.........((.(((((.......))))).))))))))))) ( -13.00)
>DroSec_CAF1 31086 94 + 1
AUAUUAUUCCUCUUCAUCUUUUUGUGUCUUUUUUCUCACUCCCCAAACAUGCAUCUUCUUCUGCCGUGGCAACCCUCGUCACAGUUGCUGUUUG
.......................(((..........)))....((((((.(((.........((.(((((.......))))).))))))))))) ( -13.00)
>DroSim_CAF1 24166 94 + 1
AUAUUAUUCCUCUUCAUCUUUUUGUGUCUUUUUUCUCACUCCCCAAACAUGCAUCUUCUUCUGCCGUGGCAACCCUCGUCACAGUUGCUGUUUG
.......................(((..........)))....((((((.(((.........((.(((((.......))))).))))))))))) ( -13.00)
>DroEre_CAF1 24248 93 + 1
AUAUUAUUCCUCUUCAUCUUUUUGAGUCUU-UUUCUCACUCCCGAAACAUGCAUCUCCUUCUGCCGUGGCAACCCUCGUCACAGUUGCUGUUUG
......................((((....-...))))......(((((.(((.........((.(((((.......))))).)))))))))). ( -13.10)
>DroYak_CAF1 31448 94 + 1
AUAUUAUUCCUCUUCAUCUUUUUGUGUCUUUUUUCUCACUCCCUAAACAUGCAUCUCCUUCUGCCGUGGCAACCCUCGUCACAGUUGCUGUUUG
.......................(((..........)))....((((((.(((.........((.(((((.......))))).))))))))))) ( -11.20)
>consensus
AUAUUAUUCCUCUUCAUCUUUUUGUGUCUUUUUUCUCACUCCCCAAACAUGCAUCUUCUUCUGCCGUGGCAACCCUCGUCACAGUUGCUGUUUG
...........................................((((((.(((.........((.(((((.......))))).))))))))))) (-11.48 = -11.56 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:33 2006