Locus 7648

Sequence ID 3R_DroMel_CAF1
Location 20,491,572 – 20,491,666
Length 94
Max. P 0.928065
window12347

overview

Window 7

Location 20,491,572 – 20,491,666
Length 94
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 85.96
Mean single sequence MFE -32.58
Consensus MFE -25.72
Energy contribution -25.76
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -2.12
Structure conservation index 0.79
SVM decision value 1.19
SVM RNA-class probability 0.928065
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20491572 94 + 27905053
AAUGUCCGAUGGGAAAGCGAAAAGACAUGGGGGA--UU-GGG----GAGACCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA
(((.(((.(((..............))).))).)--))-.((----....)).((((((((((......((.(((.......)))))...)))))))))). ( -36.54)
>DroSec_CAF1 38421 95 + 1
AAUGUCCGAUGGGAAAGCGAAAAGA--UGGGGGAACUUGGGG----GAGACCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA
....(((....)))...........--.(((....)))..((----....)).((((((((((......((.(((.......)))))...)))))))))). ( -32.90)
>DroSim_CAF1 42490 95 + 1
AAUGUCCGAUGGGAAAGCGAAAAGA--UGGGGGCAUUUGGGG----GAGACCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA
(((((((..................--...)))))))...((----....)).((((((((((......((.(((.......)))))...)))))))))). ( -34.70)
>DroEre_CAF1 39037 85 + 1
AAUGUCCGAUGGGAAAGAGAAAAUAG-CGGAGG---------------GACCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA
..(.((((..................-)))).)---------------.....((((((((((......((.(((.......)))))...)))))))))). ( -27.87)
>DroYak_CAF1 39063 99 + 1
AAUGUUCGAUGGGCAAGAGA-AAUAG-AGGAGGAAGAGGGUGGUCAGUGGCCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA
..((((.....)))).....-.....-.............((((.....))))((((((((((......((.(((.......)))))...)))))))))). ( -30.90)
>consensus
AAUGUCCGAUGGGAAAGCGAAAAGA__UGGGGGAA_UUGGGG____GAGACCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA
....(((....))).......................................((((((((((......((.(((.......)))))...)))))))))). (-25.72 = -25.76 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:08 2006