Locus 764

Sequence ID 3R_DroMel_CAF1
Location 2,671,326 – 2,671,418
Length 92
Max. P 0.619979
window1219

overview

Window 9

Location 2,671,326 – 2,671,418
Length 92
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 68.15
Mean single sequence MFE -17.56
Consensus MFE -10.47
Energy contribution -10.55
Covariance contribution 0.08
Combinations/Pair 1.18
Mean z-score -1.38
Structure conservation index 0.60
SVM decision value 0.18
SVM RNA-class probability 0.619979
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2671326 92 + 27905053
AGCUUGUGUGCAUGUAAACACGCCGCU-CUAGAACCACAAUCUGCGGUACGCACGAGUUUAAGUC--UCAA-----------AAA--AAAAAAAAAC----AACA-------AAAAUGA
((((((((((..((....)).(((((.-..(((.......)))))))).))))))))))......--....-----------...--..........----....-------....... ( -18.00)
>DroVir_CAF1 30839 77 + 1
AGCUCGUGUAUAUGUAAACAUGCCGCUUCUAAAAACU------GCCACAGGC-------CAGCGC--UCGA-----------GC------AGAGACC---CAAGA-------GACGAGA
..(((((.(.((((....)))).............((------((..(..((-------....))--..).-----------))------)).....---....)-------.))))). ( -14.50)
>DroSec_CAF1 30829 89 + 1
AGCUUGUGUGCAUGUAAACACGCCGCU-CUAGAACCUCAAUCUGCGGUACGCACGAGUUCAACUC--UUAA-----------AAA--A--AAAGAAC----AACA-------AA-AAGA
((((((((((..((....)).(((((.-..(((.......)))))))).))))))))))....((--((..-----------...--.--.))))..----....-------..-.... ( -18.40)
>DroSim_CAF1 23910 88 + 1
AGCUUGUGUGCAUGUAAACACGCCGCU-CUAGAACCUCAAUCUGCGGUACGCACGAGUUCAACUC--UUAA-----------AA------AAAGAAC----AACA-------AAAAAGA
((((((((((..((....)).(((((.-..(((.......)))))))).))))))))))....((--((..-----------..------.))))..----....-------....... ( -18.70)
>DroAna_CAF1 18552 115 + 1
AGCCUGUGUGCAUGUAAACACGCCGCU-CUAGAACCUCAAUCUGCGGUACGCACGCUCACAACUCCCUCAAAAAAAAAAUAAAAUGAA--AAUGAAAGGA-AACAAAGUCACAAAAACA
.....((((((.((....)).(((((.-..(((.......))))))))..))))))................................--..(((..(..-..)....)))........ ( -18.20)
>consensus
AGCUUGUGUGCAUGUAAACACGCCGCU_CUAGAACCUCAAUCUGCGGUACGCACGAGUUCAACUC__UCAA___________AA___A__AAAGAAC____AACA_______AAAAAGA
.((..((((........))))(((((.................)))))..))................................................................... (-10.47 = -10.55 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:32 2006