Locus 763

Sequence ID 3R_DroMel_CAF1
Location 2,670,254 – 2,670,351
Length 97
Max. P 0.553125
window1218

overview

Window 8

Location 2,670,254 – 2,670,351
Length 97
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 85.04
Mean single sequence MFE -28.92
Consensus MFE -19.96
Energy contribution -21.15
Covariance contribution 1.19
Combinations/Pair 1.11
Mean z-score -1.52
Structure conservation index 0.69
SVM decision value 0.04
SVM RNA-class probability 0.553125
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2670254 97 + 27905053
AGAGA-----GGGAGGGACAGACGUUGUCUUAGAUUGGCGAUCGUCGGUCGAGCUCAUAAGAAACCCAUAAAUUAUGGCAAUUCUUUCGGGAUCGAACUAAG
...((-----(((((.(((.(((((((((.......))))).)))).)))..((.(((((............)))))))..))))))).............. ( -25.20)
>DroSec_CAF1 29767 95 + 1
AGAGA-----G-GAGGGACAGACGUUGUCUUAGAUUGGCGAUCGUCGGUCGAGCUCAUAAGAAACCCAUAAAUUAUGGCAAUUCU-UCGGGAUCGAACUCAG
...((-----(-....(((.(((((((((.......))))).)))).)))((.(((..(((((..(((((...)))))...))))-).))).))...))).. ( -26.50)
>DroSim_CAF1 22845 95 + 1
AGAGA-----G-GAGGGACAGACGAUGCCUUAGAUUGGCGAUCGUCGGUCGAGCUCAUAAGAAACCCAUAAAUUAUGGCAAUUCU-UCGGGAUCGAACUCAG
...((-----(-....(((.(((((((((.......))).)))))).)))((.(((..(((((..(((((...)))))...))))-).))).))...))).. ( -29.90)
>DroAna_CAF1 17651 92 + 1
-----AGAGGGGGAGGACCAGACGUCGUCUUAGAUUGGCGAUCGUCGGCCCAGCUCAUAAGAAAGCCAUAAAUUAUGGCAAUUCUUUCGGGG-----CCCGG
-----...(((...((.((.(((((((((.......))))).)))))).))..(((..(((((.((((((...))))))..)))))..))).-----))).. ( -34.10)
>consensus
AGAGA_____G_GAGGGACAGACGUUGUCUUAGAUUGGCGAUCGUCGGUCGAGCUCAUAAGAAACCCAUAAAUUAUGGCAAUUCU_UCGGGAUCGAACUCAG
..............(((...(((((((((.......))))).))))..((((.(((...((((..(((((...)))))...))))...))).)))).))).. (-19.96 = -21.15 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:31 2006