Locus 762

Sequence ID 3R_DroMel_CAF1
Location 2,669,434 – 2,669,534
Length 100
Max. P 0.588592
window1217

overview

Window 7

Location 2,669,434 – 2,669,534
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.76
Mean single sequence MFE -22.02
Consensus MFE -17.83
Energy contribution -19.13
Covariance contribution 1.31
Combinations/Pair 1.17
Mean z-score -2.06
Structure conservation index 0.81
SVM decision value 0.11
SVM RNA-class probability 0.588592
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2669434 100 - 27905053
GUUUACAAUAUUUCCU-UAAUUUUUAUU-----------UUUUGUUGUGUUUUCCCCGAGAACCCUGCUCAUCAAAUAAAUCUCUGUCCAAAGUUGAGCAUUCGCUCCUU--------GG
...(((((((......-...........-----------...)))))))......(((((.....((((((.......................)))))).......)))--------)) ( -12.55)
>DroSec_CAF1 28918 108 - 1
GUUUACAAUAUUUCCU-UAAUUUUUAUU-----------UUUUGUUGUGUUUUCCCCGAGAACCCUGCUCAUCAAAUAAAUCUCUGUCCAAAGUUGAGCAUUCGCUCCUUGGGUUCUUGG
...(((((((......-...........-----------...)))))))......((((((((((((((((.......................))))))..........)))))))))) ( -23.65)
>DroSim_CAF1 21991 108 - 1
GUUUACAAUAUUUCCU-UAAUUUUUAUU-----------UUUUGUUGUGUUUUCCCCGAGAACCCUGCUCAUCAAAUAAAUCUCUGUCCAAAGUUGAGCAUUCGCUCCUUGGGUUCUCGG
...(((((((......-...........-----------...)))))))......((((((((((((((((.......................))))))..........)))))))))) ( -25.75)
>DroEre_CAF1 21966 107 - 1
GUUUACAACAUUUCCU-UAAUUUUUAUU------------UUUGUUGUGUUUUCCUCGAGAACCCUGCUCAUCAAAUAAAUCUCUGUCCAAAGUUGAGCACUCGCUGCUUGGGUUCUUGG
...(((((((......-...........------------..))))))).......(((((((((((((((.......................))))))..........))))))))). ( -23.41)
>DroYak_CAF1 29140 108 - 1
GCUUACAACAUUUCCU-UAAUUUUUAUU-----------UUUUGUUGUGUUUUCCCCGAGAACCCUGCUCAUCAAAUAAAUCUCUGUCCAAAGUUGAGCAUUCGCUCCUUGGGUUCUUGG
...(((((((......-...........-----------...)))))))......((((((((((((((((.......................))))))..........)))))))))) ( -25.55)
>DroAna_CAF1 16954 120 - 1
GUUUACAAUAUUUCCUUUAAUUUGUAUUUCUUUCUUUUCUUUUUUUGUGAUUUCCCCGGGAACAGUGCUCAUCAAAUAAAUCUCUGUCCAAAGUUGAGCAUUUGCUCCUUGGGUUCUUGG
...(((((.(((......))))))))......................((...(((.((((.(((((((((.......................)))))).))).)))).))).)).... ( -21.20)
>consensus
GUUUACAAUAUUUCCU_UAAUUUUUAUU___________UUUUGUUGUGUUUUCCCCGAGAACCCUGCUCAUCAAAUAAAUCUCUGUCCAAAGUUGAGCAUUCGCUCCUUGGGUUCUUGG
...(((((((................................)))))))......((((((((((((((((.......................))))))..........)))))))))) (-17.83 = -19.13 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:30 2006