| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,404,785 – 20,404,896 |
| Length | 111 |
| Max. P | 0.582661 |
| Location | 20,404,785 – 20,404,896 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 80.06 |
| Mean single sequence MFE | -28.15 |
| Consensus MFE | -16.18 |
| Energy contribution | -16.92 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20404785 111 - 27905053 GAUCCAUUGUUCGUUUCACGUGG-AUUGUUCUACUUACCGU-ACUGCUUACAGAACUUUGUAAGAC--AGACAAUGGAGGGAAUCCAAAAACAGGACUCGCGAAGGAGACAACCC ..((((((((.........((((-(....))))).......-.((((((((((....))))))).)--))))))))))(((..(((.......)))(((......)))....))) ( -31.80) >DroSec_CAF1 27329 112 - 1 GAUCCAUUGUUCGUUCCACGCGGAAUUGUUCUACUUACCGA-ACUGCUUACAGAACUUUGUAAGAC--AGACAAUGGAGGGAGUCCAAAAAAAGGACUCGCGAAGGAGACAACCC ..(((((((((.(((((....))))).((((........))-))(((((((((....))))))).)--))))))))))(.((((((.......)))))).)...(....)..... ( -36.50) >DroSim_CAF1 30355 112 - 1 GAUCCAUUGUUCGUUCCACGCGGAAUUGUUCUACUUACCGA-ACUGCUUACAGAACUUUGUAAGAC--AGACAAUGGAGGGAAUCCAAAAACAGGACUCGCGAAGGAGACAACCC ..(((((((((.(((((....))))).((((........))-))(((((((((....))))))).)--))))))))))(((..(((.......)))(((......)))....))) ( -30.90) >DroEre_CAF1 26954 106 - 1 GAUCCAUUGUUC----CACGUG-AAUUGUUCUACUUACCUA-ACUGCUUACAGAACUUUGUAAGAC--AGACAAUGGAGGGAAUCCAA-AACAGGACUCGCGAAGGAGACAACCC ......((((((----(.((((-(...(((((.........-.((((((((((....))))))).)--))....((((.....)))).-...))))))))))..))).))))... ( -27.20) >DroYak_CAF1 31148 106 - 1 GAUCCAUUGUUC----CGAAAA-GAUUGUUCUACUUACCGA-ACUGCUUACAGAACUUUGUAAGAC--AGACAAUGGAGGGAAUCCAG-AACAGGACUCGCGAAGAAGACAACCC ..((((((((..----.....(-((....))).........-.((((((((((....))))))).)--))))))))))(.((.(((..-....))).)).).............. ( -26.00) >DroAna_CAF1 27329 92 - 1 AGACCAUUGUUCCU-CCAAAAGAAAUCCUGCUACUUGGCAACACUGCUUACAGGAUUCUGUAAGACUUAGACAAUAGAAGGAAAUCAG----------------------AACCC ..............-......((..((((.(((..((....))...(((((((....)))))))..........))).))))..))..----------------------..... ( -16.50) >consensus GAUCCAUUGUUCGU_CCACGAGGAAUUGUUCUACUUACCGA_ACUGCUUACAGAACUUUGUAAGAC__AGACAAUGGAGGGAAUCCAA_AACAGGACUCGCGAAGGAGACAACCC ..(((((((((................((.......))........(((((((....))))))).....)))))))))(((..(((.......)))(((......)))....))) (-16.18 = -16.92 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:04 2006