Locus 758

Sequence ID	3R_DroMel_CAF1
Location	2,664,152 – 2,664,243
Length	91
Max. P	0.995596

overview

Window 9

Location	2,664,152 – 2,664,243
Length	91
Sequences	6
Columns	91
Reading direction	forward
Mean pairwise identity	94.51
Mean single sequence MFE	-28.18
Consensus MFE	-24.70
Energy contribution	-26.03
Covariance contribution	1.33
Combinations/Pair	1.00
Mean z-score	-2.09
Structure conservation index	0.88
SVM decision value	1.63
SVM RNA-class probability	0.968823
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2664152 91 + 27905053
GCUGGCUGACAUCUUUUGAUGAUCUGCUUGGAGGUCUGCCAGCUUUGGUCUUGUCAAUUAGGGAAUGAAUUUCCCAAAUGAAUGCCAAACG
((((((.((((((....)))..(((....))).))).))))))((((((....(((.((.(((((.....))))))).)))..)))))).. ( -31.30)
>DroSec_CAF1 23666 91 + 1
GCUGGCUGACAUCUUUUGAUGAUCUGCUUGGAGGUCUGCCAGCUUUGGUCUUGUCAAUUAGGGAAUGAAUUUCCCAAAUGAAUGCCAAACG
((((((.((((((....)))..(((....))).))).))))))((((((....(((.((.(((((.....))))))).)))..)))))).. ( -31.30)
>DroSim_CAF1 16757 91 + 1
GCUGGCUGACAUCUUUUGAUGAUCUGCUUGGAGGUCUGCCAGCUUUGGUCUUGUCAAUUAGGGAAUGAAUUUCCCAAAUGAAUGCCAAACG
((((((.((((((....)))..(((....))).))).))))))((((((....(((.((.(((((.....))))))).)))..)))))).. ( -31.30)
>DroEre_CAF1 16681 91 + 1
GCUGGCUGACAUCUUUUGAUGAUCUGCUUGGAGGUCUGCCAGCUUUGGUCUUGUCAAUUAGGGAACGAAUUUCCCAAAUGAAUGCCAAACG
((((((.((((((....)))..(((....))).))).))))))((((((....(((.((.(((((.....))))))).)))..)))))).. ( -30.40)
>DroYak_CAF1 23883 91 + 1
ACUGGCUGACAUCUUUUGAUGAUCUGCUUGGAGGUCUGCCAGCUUCGGUCUUGUCAAUUAGGGAAUGAAUUUCCCAAAUGAAUGCCAAACG
.(((((.((((((....)))..(((....))).))).)))))....(((....(((.((.(((((.....))))))).)))..)))..... ( -25.60)
>DroAna_CAF1 11849 87 + 1
GAUGGCUG-CAUCGUUUGAUGAUCUGCUUGGAGCCCUGCCAGCUUUGGUCUUGUCAAUUAGAGAAUGAAUUUCG---UUGAAUGCCAAACA
..((((..-((((..(((((((((.(((.((.......)))))...))))..)))))...))(((.....))).---.))...)))).... ( -19.20)
>consensus
GCUGGCUGACAUCUUUUGAUGAUCUGCUUGGAGGUCUGCCAGCUUUGGUCUUGUCAAUUAGGGAAUGAAUUUCCCAAAUGAAUGCCAAACG
((((((.((((((....)))).(((....)))..)).))))))((((((....(((.((.(((((.....))))))).)))..)))))).. (-24.70 = -26.03 +   1.33)

alignment

secondary structure

dotplot

Window 0

Location	2,664,152 – 2,664,243
Length	91
Sequences	6
Columns	91
Reading direction	reverse
Mean pairwise identity	94.51
Mean single sequence MFE	-22.85
Consensus MFE	-21.61
Energy contribution	-22.00
Covariance contribution	0.39
Combinations/Pair	1.07
Mean z-score	-1.77
Structure conservation index	0.95
SVM decision value	2.59
SVM RNA-class probability	0.995596
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2664152 91 - 27905053
CGUUUGGCAUUCAUUUGGGAAAUUCAUUCCCUAAUUGACAAGACCAAAGCUGGCAGACCUCCAAGCAGAUCAUCAAAAGAUGUCAGCCAGC
..((((((..(((.(((((((.....))))).)).)))...).)))))((((((.(.....).....((.((((....)))))).)))))) ( -25.20)
>DroSec_CAF1 23666 91 - 1
CGUUUGGCAUUCAUUUGGGAAAUUCAUUCCCUAAUUGACAAGACCAAAGCUGGCAGACCUCCAAGCAGAUCAUCAAAAGAUGUCAGCCAGC
..((((((..(((.(((((((.....))))).)).)))...).)))))((((((.(.....).....((.((((....)))))).)))))) ( -25.20)
>DroSim_CAF1 16757 91 - 1
CGUUUGGCAUUCAUUUGGGAAAUUCAUUCCCUAAUUGACAAGACCAAAGCUGGCAGACCUCCAAGCAGAUCAUCAAAAGAUGUCAGCCAGC
..((((((..(((.(((((((.....))))).)).)))...).)))))((((((.(.....).....((.((((....)))))).)))))) ( -25.20)
>DroEre_CAF1 16681 91 - 1
CGUUUGGCAUUCAUUUGGGAAAUUCGUUCCCUAAUUGACAAGACCAAAGCUGGCAGACCUCCAAGCAGAUCAUCAAAAGAUGUCAGCCAGC
..((((((..(((.(((((((.....))))).)).)))...).)))))((((((.(.....).....((.((((....)))))).)))))) ( -25.20)
>DroYak_CAF1 23883 91 - 1
CGUUUGGCAUUCAUUUGGGAAAUUCAUUCCCUAAUUGACAAGACCGAAGCUGGCAGACCUCCAAGCAGAUCAUCAAAAGAUGUCAGCCAGU
..((((((..(((.(((((((.....))))).)).)))...).)))))((((((.(.....).....((.((((....)))))).)))))) ( -23.60)
>DroAna_CAF1 11849 87 - 1
UGUUUGGCAUUCAA---CGAAAUUCAUUCUCUAAUUGACAAGACCAAAGCUGGCAGGGCUCCAAGCAGAUCAUCAAACGAUG-CAGCCAUC
(((((((..(((..---.(((.....)))............(.(((....)))).)))..)))))))...((((....))))-........ ( -12.70)
>consensus
CGUUUGGCAUUCAUUUGGGAAAUUCAUUCCCUAAUUGACAAGACCAAAGCUGGCAGACCUCCAAGCAGAUCAUCAAAAGAUGUCAGCCAGC
..((((((..(((...(((((.....)))))....)))...).)))))((((((.(.....).....((.((((....)))))).)))))) (-21.61 = -22.00 +   0.39)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:23 2006