| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,306,283 – 20,306,376 |
| Length | 93 |
| Max. P | 0.983151 |
| Location | 20,306,283 – 20,306,376 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 74.21 |
| Mean single sequence MFE | -29.13 |
| Consensus MFE | -19.85 |
| Energy contribution | -20.02 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.983151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20306283 93 + 27905053 GGGUGCGA---CUGGUCAUAAAGACGACAACGUGGCGCUGCUAACAACGAACCGGA----AACAGGAAAUGCCAAGUGGCAGUGCCAAGAUGGAG-----GACCA .(((.(..---...(((.....)))..((.(.(((((((((((..........(..----..).((.....))...))))))))))).).))..)-----.))). ( -31.40) >DroGri_CAF1 146085 102 + 1 CGCUACUU---GAUCUCAUAAAGAUGGCAACAUGGAGCUGCAAACAACAGACCGGAAUGAAACCGGAAAUGCCAAGUAGCAGUGCCAAGGCAAAGUCAGUUGCCA .(((((((---.((((.....))))((((........(((.......))).((((.......))))...)))))))))))........(((((......))))). ( -30.20) >DroEre_CAF1 118721 92 + 1 -GGUACCA---CUGGUCAUAAAGACGACAACGUGGCGCUGCUAACAACGAACCGGA----AACAGGAAAUGCCAAGUGGCAGUGCCAAGAUGGAG-----GACAA -.((.((.---...(((.....)))..((.(.(((((((((((..........(..----..).((.....))...))))))))))).).))..)-----))).. ( -29.00) >DroWil_CAF1 124767 101 + 1 GAAUGGGAUUGGCAGUCAUAAAAACGACAACGUGGCGCUCCUAACAACAGACCGGA----AGCCGGAAAUGCCAAGUGGCAGUGCCAAGGCAGAGACUGACUCCA .....(((....(((((......(((....)))(((((.............((((.----..))))...((((....)))))))))........)))))..))). ( -31.10) >DroYak_CAF1 121045 93 + 1 GGGUACAA---CUGGUCAUAAAGACGACAACGUGGCGCUGCUAACAACGAACCGGA----AACCGGAAAUGCCAAGUGGCAGUGCCAAGAUGGAA-----CACGA ........---...(((.....)))..((.(.(((((((((((........((((.----..))))..........))))))))))).).))...-----..... ( -26.87) >DroMoj_CAF1 148463 96 + 1 --ACGCUU---CGAGUCAUAAGAGCUACAACGUGGCGUUGCUAACAACAGAGCGGA----AACCGGAAAUGCCGAGCAGCAGUGCCAAGGCUCACGCAGUCGCCA --..((..---.(((((......(((((...)))))((((((...........(..----..)(((.....)))))))))........)))))..))........ ( -26.20) >consensus GGGUACGA___CUGGUCAUAAAGACGACAACGUGGCGCUGCUAACAACAAACCGGA____AACCGGAAAUGCCAAGUGGCAGUGCCAAGACGGAG_____CACCA ..............(((......(((....)))((((((((((....((..((((.......))))...)).....))))))))))..))).............. (-19.85 = -20.02 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:19 2006