| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,661,694 – 2,661,793 |
| Length | 99 |
| Max. P | 0.965047 |
| Location | 2,661,694 – 2,661,793 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 95.98 |
| Mean single sequence MFE | -26.62 |
| Consensus MFE | -23.54 |
| Energy contribution | -24.42 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2661694 99 - 27905053 AUAUUUAAGGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCAGGAACAUACAAAC- ........((.((((....)))).))............((((((.((.(.((((.((..((((((....))))))..)))))).).)).)))).))...- ( -28.10) >DroSec_CAF1 21104 99 - 1 AUAUUUAAGGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCGGGAACAAACAAAC- ........((.((((....)))).))...............(((.((.(.((((.((..((((((....))))))..)))))).).)).))).......- ( -27.00) >DroSim_CAF1 14245 99 - 1 AUAUUUAAGGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCGGGAACAUACAAAC- ........((.((((....)))).))............((((((.((.(.((((.((..((((((....))))))..)))))).).)).)))).))...- ( -28.80) >DroEre_CAF1 14239 100 - 1 AUAUUUAAAGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCAGGAACGUACAUACG .((((......((((....))))......))))....(((((((.((.(.((((.((..((((((....))))))..)))))).).)).)))).)))... ( -25.50) >DroYak_CAF1 21215 99 - 1 AUAUUUAAAGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCAGGAACCCACAUAU- .((((......((((....))))......)))).......(((((((.(.((((.((..((((((....))))))..)))))).).))....)))))..- ( -23.70) >consensus AUAUUUAAGGAGCCAACAAUGGCGCCACUAAUGACUGAUGAUGUGCCAGCGCUGAUAGAUACAGAUACAUCUGUGGAUGCAGCUCAGGAACAUACAAAC_ .((((...((.((((....)))).))...)))).....((((((.((.(.((((.((..((((((....))))))..)))))).).)).)))).)).... (-23.54 = -24.42 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:21 2006