| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,658,219 – 2,658,318 |
| Length | 99 |
| Max. P | 0.525734 |
| Location | 2,658,219 – 2,658,318 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.82 |
| Mean single sequence MFE | -33.90 |
| Consensus MFE | -20.26 |
| Energy contribution | -20.18 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2658219 99 + 27905053 CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGC-----GAGCGUCGCGCAUGCGCACAUAAAUUAGCCG---AGCUGCGCGGAAAACCUGUUCUGUG--UUUUCG- ....(((.((((((((((..((((((.....))))))-----.......(((....))).))).))))))).)---))..((((((((......)))))))--).....- ( -35.30) >DroGri_CAF1 8611 100 + 1 CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGC-----AAGCGUCGCGCUUGCGCAUAUAAAUUAGCUG---GCGCGACGGUCAAACCAGUUAUACA--GAUACCC .................(((((((((.....))))))-----.(((((((((((.((............)).)---)))))))((.....)).))).....--....))) ( -37.20) >DroEre_CAF1 10610 91 + 1 CUACCUCAGUUAAUUAUUGGGCUCCCGAGCAGGGAGC-----GAACGUCGCGCAUGCGCACAUAAAUUAGCCG---AGCUGCGCGGAAAACCUGUUCU----------G- .....(((((.....)))))((((((.....))))))-----((((((((((((.((((..........))..---.)))))))))......))))).----------.- ( -29.10) >DroYak_CAF1 17774 106 + 1 CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGCCUCCCGAGCGUCGCGCAUGCGCACAUAAAUUAGCCG---AGCUGCGCUGAAAACCUGUUCUCUGUUUUUUCG- ....(((.(((((((..(((((((((.....)))))))))......((.(((....)))))...))))))).)---))...((..((((((..(....).)))))).))- ( -33.20) >DroMoj_CAF1 23647 91 + 1 CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGC-----GAGCGUUGCGCAUGCGCACAUAAAUUAGCUG---ACGCGCCAACAAAACCGGUUC-----------CU .....(((((((((((((..((((((.....))))))-----..((((.......)))).))).)))))))))---).(.(((.........))).)-----------.. ( -30.70) >DroAna_CAF1 6438 102 + 1 CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGC-----GAGCGUCGCGCAUGCGCACAUAAAUUAGUCGGGUAGCUGCGGUGGAAACCAGUUUUUCG--GUUUCC- ..(((.((((((....(((.((((((.....))))))-----....((.(((....))))).........)))..)))))).)))(((((((........)--))))))- ( -37.90) >consensus CUACCUCAGUUAAUUAUGGGGCUCCCGAGUAGGGAGC_____GAGCGUCGCGCAUGCGCACAUAAAUUAGCCG___AGCUGCGCGGAAAACCUGUUCU__G___UUUCC_ ........((((((((((..((((((.....))))))............(((....))).))).)))))))....................................... (-20.26 = -20.18 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:20 2006