Locus 7537

Sequence ID 3R_DroMel_CAF1
Location 20,182,455 – 20,182,572
Length 117
Max. P 0.592680
window12165

overview

Window 5

Location 20,182,455 – 20,182,572
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 77.32
Mean single sequence MFE -43.45
Consensus MFE -28.12
Energy contribution -26.65
Covariance contribution -1.47
Combinations/Pair 1.41
Mean z-score -1.26
Structure conservation index 0.65
SVM decision value 0.12
SVM RNA-class probability 0.592680
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20182455 117 + 27905053
CUCGUAAUCGCUCUUGGCUCCCGUGUUGGCUUCCUCGCUCAAUCGCUGACGCAUCUGCUGAAGCUGCUGCUCCCGCUCCUGGAGUCGAGUGGCGGCAGCAGCCAUUUGGUUACUAAG
...((((((....(..((....((((..((..............))..))))....))..).(((((((((.((((((........)))))).))))))))).....)))))).... ( -46.74)
>DroPse_CAF1 8192 117 + 1
CUCGUAGUCGUUCUUGGCACUGGUGUGGACCUCACCGCUGAGGCGCUGGCGCAGCUGUUGUACCUGUUGCUCCCGUUCUUGCAGGCGAGUGGCAGCAGCGGCCAUCUGAUUGCUAAG
...((((((.......((.(..(((....(((((....))))))))..).)).(((((((...((((..(((((((....)).)).)))..))))))))))).....)))))).... ( -45.10)
>DroGri_CAF1 10514 117 + 1
CUCAUAGUCAUUUUUGGCACUUGUAAAGCCCGUUUCGCUAACAAGCUGACGCUGCUGUUGCAAUUGUUUCUCCUUUUCCUGCAAUCGUGUUGCGGCGGCAGCCAUUUGAUUGCUCAU
....((((((....((((.(((((..(((.......))).))))).....((((((((.((((((((.............)))))..))).)))))))).))))..))))))..... ( -33.72)
>DroSim_CAF1 7820 117 + 1
CUCGUAAUCGUUCUUGGCUCCCGUGUUGGCUUCCUCGCUCAACCGCUGACGCAUCUGCUGAAGCUGCUGCUCCCGCUCCUGGAGGCGAGUGGCAGCAGCAGCCAUUUGGUUGCUAAG
............((((((..((((((..((..............))..))))..........(((((((((.(((((((.....).)))))).))))))))).....))..)))))) ( -47.44)
>DroAna_CAF1 7151 117 + 1
CUCGUAGUCGUUUUUGGCUCCGGCAUUGGCACCCUCACUAAGCCGCUGCCGCAUCUGCUGUAGUUGCUGCUCCCGCUCCUGGAGGCGAGUGGCGGAGGCUGCCAUUUGGUUACUCAG
.(((.(((((....))))).)))((.(((((.((((....(((.(((((.((....)).))))).)))((..(((((......)))).)..)).)))).)))))..))......... ( -42.60)
>DroPer_CAF1 8211 117 + 1
CUCGUAGUCGUUCUUGGCACUGGUGUGGACCUCACCGCUGAGGCGCUGGCGCAGCUGUUGUACCUGUUGCUCCCGUUCUUGCAGGCGAGUGGCAGCAGCGGCCAUCUGAUUGCUAAG
...((((((.......((.(..(((....(((((....))))))))..).)).(((((((...((((..(((((((....)).)).)))..))))))))))).....)))))).... ( -45.10)
>consensus
CUCGUAGUCGUUCUUGGCACCGGUGUUGGCCUCCUCGCUAAGCCGCUGACGCAGCUGCUGUAGCUGCUGCUCCCGCUCCUGCAGGCGAGUGGCAGCAGCAGCCAUUUGAUUGCUAAG
...(((((((....((((..........................((....))...(((((...((((..(((((.........)).)))..)))))))))))))..))))))).... (-28.12 = -26.65 +  -1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:17 2006