Locus 7533

Sequence ID 3R_DroMel_CAF1
Location 20,149,059 – 20,149,164
Length 105
Max. P 0.516082
window12160

overview

Window 0

Location 20,149,059 – 20,149,164
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 89.33
Mean single sequence MFE -34.03
Consensus MFE -30.37
Energy contribution -30.10
Covariance contribution -0.27
Combinations/Pair 1.30
Mean z-score -1.25
Structure conservation index 0.89
SVM decision value -0.03
SVM RNA-class probability 0.516082
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20149059 105 - 27905053
UCUUCCACAUUCGAGUAGCUCGUGUCGCCGGACGAGUUGCUGGACACAUCUUCCUCCUCUUCCUCGGGUGGCGGCGCUACCUCAUCGUAGUGCUCCGGCUCCUGA
..........((.((((((((((........)))))))))).))...................(((((.(.(((((((((......)))))))..)).).))))) ( -35.70)
>DroSec_CAF1 8115 105 - 1
UCUUCCACAUUCGAGUAGCUGGUGUCGCCGGAUGAGUUGCUGGACACUUCUUCCUCCUCUUCCUCGGGUGGCUGCGCUACCUCAUCGUAGUGCUCCGGCUCCUGA
.............((.((((((.((((((.((.(((..(..(((.......)))..)..))).)).)))))).(((((((......))))))).)))))).)).. ( -36.50)
>DroSim_CAF1 8108 105 - 1
UCUUCCACAUUCGAGUAGCUGGUGUCGCCGGAUGAGUUGCUGGACACUUCUUCCUCCUCUUCCUCGGGUGGCUGCGCUACCUCAUCGUAGUGCUCCGGCUCCUGA
.............((.((((((.((((((.((.(((..(..(((.......)))..)..))).)).)))))).(((((((......))))))).)))))).)).. ( -36.50)
>DroEre_CAF1 8163 105 - 1
UCCUCCACAUUCGAGUAGCUGGUGUCGCCAGAUGAGUUGCUGGACACUUCUUCCUCCUCUUCCUCGGGCGGCGGCGCUACCUCAUCGUAGCGCUCUGGCUCCUGA
.............((.(((..(.((((((.((.(((..(..(((.......)))..)..))).)).))))))((((((((......)))))))))..))).)).. ( -37.20)
>DroYak_CAF1 8180 105 - 1
UCCUCCACAUUCGAGUAGCUGGUGUCGCCGGACGAGUUGCUGGACACUUCUUCUUCCUCUUCCUCAGGCGGCGGCGCUAUCUCAUCGUAGCGCUCUGGCUCCUGA
.............((.(((..(.(((((((((.(((..(..(((....)))..)..))).)))...))))))((((((((......)))))))))..))).)).. ( -36.30)
>DroAna_CAF1 8275 105 - 1
UCCUCUACAUUCGAGUAGCUGGUGUCCCCGGAUGAGUUGCUAGACACAUCCUCUUCCUCCUCCUCGUGCGGCUGAGCCUCUUCAUCGUAAUUGUCUUGUUCCUGG
.((...(((..((((.((..((.......(((((.(((....))).)))))....))..)).))))(((((.((((....))))))))).......)))....)) ( -22.00)
>consensus
UCCUCCACAUUCGAGUAGCUGGUGUCGCCGGAUGAGUUGCUGGACACUUCUUCCUCCUCUUCCUCGGGCGGCGGCGCUACCUCAUCGUAGUGCUCCGGCUCCUGA
.............((.((((((.((((((.((.(((..(..(((.......)))..)..))).)).)))))).(((((((......))))))).)))))).)).. (-30.37 = -30.10 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:12 2006