Locus 750

Sequence ID 3R_DroMel_CAF1
Location 2,640,122 – 2,640,242
Length 120
Max. P 0.598062
window1191

overview

Window 1

Location 2,640,122 – 2,640,242
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.50
Mean single sequence MFE -30.12
Consensus MFE -27.10
Energy contribution -26.78
Covariance contribution -0.32
Combinations/Pair 1.12
Mean z-score -1.19
Structure conservation index 0.90
SVM decision value 0.13
SVM RNA-class probability 0.598062
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2640122 120 - 27905053
GACCGUUUUCCGUUUUACCAAUUGUUUCUUUGCUCAUUUAGUAUGCAAAUGGUUCGAACUAAAACCGGCUACUGACUAAUAAGCAAAUGAGCAGGUGACGGCUAACCAAACUCGCUAGGU
....(((..(((((..(((...(((((.((((((...(((((.......(((((........))))).......)))))..)))))).)))))))))))))..))).............. ( -28.34)
>DroSec_CAF1 40238 120 - 1
GACCGUUUUCCGUUUUACCAAUUGUUUCUUUGCUCAUUUAGUAUGCAAAUGGUUCGAACUAAAACCAGCUACUGACUAAUAAGCAAAUGAGCAGGUGACGGCUAACCAAGCUCGCUAGGU
.((((((..(((((..(((...(((((.((((((...(((((.......(((((........))))).......)))))..)))))).)))))))))))))..)))..((....)).))) ( -31.14)
>DroSim_CAF1 28509 120 - 1
GACCGUUUUCCGUUUUACCAAUUGUUUCUUUGCUCAUUUAGUAUGCAAAUGGUUCGAACUAAAACCGGCUACUGACUAAUAAGCAAAUGAGCAGGUGACGGCUAACCAAGCUCGCUAGGU
.((((((..(((((..(((...(((((.((((((...(((((.......(((((........))))).......)))))..)))))).)))))))))))))..)))..((....)).))) ( -30.44)
>DroEre_CAF1 31126 120 - 1
CACCGUUUUCCGUUUUACCAAUUGUUUCUAUGCUCAUUUAGUAUGCAAAUGGUUUGAACUAAAACCGGCUACUGACUAAUAGGCACAUGAACAGGUGAGGGCUAACCCAACUCGCUAGGU
.(((..........(((((...(((((.(.(((..((((((((.((....(((((......))))).))))))))...))..))).).))))))))))(((....))).........))) ( -28.10)
>DroYak_CAF1 21892 120 - 1
GACCGUUUUUCGUUUUACCAAUUGUUUCUUUGCUCAUUUAGUAUGCAAAUGGUUUGAACUAAAACCGGCUGCUGACUAAUAGGCAAAUGAGCAGGUGACGGCUAACCAAACUCGCUAGGU
....(((..(((((..(((...(((((.((((((...(((((..(((..((((((......))))))..)))..)))))..)))))).)))))))))))))..))).............. ( -32.60)
>consensus
GACCGUUUUCCGUUUUACCAAUUGUUUCUUUGCUCAUUUAGUAUGCAAAUGGUUCGAACUAAAACCGGCUACUGACUAAUAAGCAAAUGAGCAGGUGACGGCUAACCAAACUCGCUAGGU
....(((..(((((..(((...(((((.((((((...(((((.......(((((........))))).......)))))..)))))).)))))))))))))..))).............. (-27.10 = -26.78 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:05 2006