Locus 7497

Sequence ID 3R_DroMel_CAF1
Location 20,040,642 – 20,040,732
Length 90
Max. P 0.968159
window12111

overview

Window 1

Location 20,040,642 – 20,040,732
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -31.76
Consensus MFE -28.92
Energy contribution -28.92
Covariance contribution -0.00
Combinations/Pair 1.07
Mean z-score -1.76
Structure conservation index 0.91
SVM decision value 1.62
SVM RNA-class probability 0.968159
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20040642 90 - 27905053
UCGUGUUGGCUGGGAGUAGCAAUCGGAGUUGUCUCAGCAUCUCGGCGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCGGGCAGA
.((.(...(((((((.((((.......)))))))))))..).))((.((((((..(((((..(......)..)))))..))))))))... ( -30.90)
>DroSec_CAF1 29162 90 - 1
UCGUGUUGGCUGGGAGUAGCAAUCGGAGUUGUCUCAGCAUCUCGGCGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCGGGCAGA
.((.(...(((((((.((((.......)))))))))))..).))((.((((((..(((((..(......)..)))))..))))))))... ( -30.90)
>DroSim_CAF1 28918 90 - 1
UCGUGUUGGCUGGGAGUAGCAAUCGGAGUUGUCUCAGCAUCUCGGCGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCGGGCAGA
.((.(...(((((((.((((.......)))))))))))..).))((.((((((..(((((..(......)..)))))..))))))))... ( -30.90)
>DroEre_CAF1 31515 89 - 1
UCGUGUUGGCUGAGAGUAGCAAUCGCAGUUGUCUCAGCAUCUCGGUGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCG-GCAGA
(((.(...(((((((.((((.......)))))))))))..).)))((((((((..(((((..(......)..)))))..)))))-))).. ( -33.40)
>DroYak_CAF1 31986 89 - 1
UCGUGUUGGCUGAGAGUAGCAAUCGGAGUUGUCUCAGCAUCUCGGCGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCG-GCAGA
(((.(...(((((((.((((.......)))))))))))..).))).(((((((..(((((..(......)..)))))..)))))-))... ( -32.70)
>consensus
UCGUGUUGGCUGGGAGUAGCAAUCGGAGUUGUCUCAGCAUCUCGGCGCUGGAAAAUGUCACAGAUUUUCCAUUGGCAGGUUCCGGGCAGA
.((.(...(((((((.((((.......)))))))))))..).))((.((((((..(((((..(......)..)))))..))))))))... (-28.92 = -28.92 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:24 2006