| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,639,660 – 2,639,778 |
| Length | 118 |
| Max. P | 0.795694 |
| Location | 2,639,660 – 2,639,778 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.09 |
| Mean single sequence MFE | -25.15 |
| Consensus MFE | -21.59 |
| Energy contribution | -21.31 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.795694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2639660 118 - 27905053 GAGAGGGAGUGCCCGAGAUUAGAUAUGA--AUUUUGAAAAGUUUGCAUAGGAAAUGUGCUUAUAAAUAUGAAAGAGCUAAGGAAAGUGUUAAGCAUUUUCAGAUUCAAAUCUGUUGACUG ....(((....))).....(((((.(((--((((.....((((((((((.....)))))((((....))))..)))))...(((((((.....)))))))))))))).)))))....... ( -25.90) >DroSec_CAF1 39777 118 - 1 GAGAGGGAGUGCCCGAGAUUAGAUAUGA--AUUUUGAAAAGUUUGCAUAGGAAACGUGCUUAUAAAUAUGAAAGAGCUAAGGAAAGUGUCAAGCGUUUUCAGAUUCAAAUCUGUUGACUG ....(((....))).....(((((.(((--((((.(((((((((((((.(....)..((((............))))........))).))))).)))))))))))).)))))....... ( -28.10) >DroSim_CAF1 28044 118 - 1 GAGAGGGAGUGCCCGAGAUUAGAUAUGA--AUUUUGAAAAGUUUGCAUAGGAAAUGUGCUUAUAAAUAUGAAAGAGCUAAGGAAAGUGUCAAGCGUUUUCAGAUUCAAAUCUGUUGACUG ....(((....))).....(((((.(((--((((.(((((((((((((.........((((............))))........))).))))).)))))))))))).)))))....... ( -25.73) >DroEre_CAF1 30661 118 - 1 GAGAGGGAGUGCCCGAGAUUAGAUAUGA--GUUUUGAAAAGUUUGCAUAUGAAAUGUACUCAUAAAUAUGAAAGAGCUAAGGAAAGUGUUAAGCGUUUUCGGAUUCAAAUCUGUUGACUG ....(((....))).....(((((.(((--((((.....(((((.(((((...(((....)))..)))))...)))))...(((((((.....)))))))))))))).)))))....... ( -24.10) >DroYak_CAF1 21437 112 - 1 GAGAGGGAGUGCCCGAGAUUAGAUAUGAAAAUUUUAAAAAGUUUGCAUAGGAAAUGUGCUCAUAAAUUUGAAAGAGCUAUGGAAAGUGUCAAGCGUUUUCGGAUUCAAAUUU-------- ....(((....))).........(((((((((((....))))))(((((.....))))))))))((((((((((.(((.(((......)))))).)))))))))).......-------- ( -21.90) >consensus GAGAGGGAGUGCCCGAGAUUAGAUAUGA__AUUUUGAAAAGUUUGCAUAGGAAAUGUGCUUAUAAAUAUGAAAGAGCUAAGGAAAGUGUCAAGCGUUUUCAGAUUCAAAUCUGUUGACUG ....(((....))).....(((((.(((....((((((((((((((((.........((((............))))........))).))))).)))))))).))).)))))....... (-21.59 = -21.31 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:04 2006