Locus 748

Sequence ID 3R_DroMel_CAF1
Location 2,638,397 – 2,638,516
Length 119
Max. P 0.646755
window1189

overview

Window 9

Location 2,638,397 – 2,638,516
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 96.97
Mean single sequence MFE -27.42
Consensus MFE -26.64
Energy contribution -26.16
Covariance contribution -0.48
Combinations/Pair 1.10
Mean z-score -1.13
Structure conservation index 0.97
SVM decision value 0.24
SVM RNA-class probability 0.646755
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2638397 119 - 27905053
GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGAUAUUCGCGGCGAAUGGCAGGAAGGUGAAGCAGAAAUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU
(((((........)))))................((((((..(((..........)))..)))))).((((.(((....((((....)))).(((((....))))).....))).)))) ( -26.20)
>DroSec_CAF1 38547 119 - 1
GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGAUAUUCGCGGCGAAUGGCAGGAAGGUGAAGCAGCGAUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU
(((((........)))))................((((((..(((..........)))..)))))).((((.(((....((((....)))).(((((....))))).....))).)))) ( -26.60)
>DroSim_CAF1 26776 119 - 1
GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGAUAUUCGCGGCGAAUGGCAGGAAGGUGAAGCAGCAAUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU
(((((........)))))................((((((..(((..........)))..)))))).((((.(((....((((....)))).(((((....))))).....))).)))) ( -26.20)
>DroEre_CAF1 29406 119 - 1
GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGAUUUUCGCGGCGAAUGGCAGGAAGGUGAAGUAGCAAUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU
(((((........)))))................((((((..(((..........)))..)))))).((((.(((((....)).........(((((....))))).....))).)))) ( -26.70)
>DroYak_CAF1 20320 119 - 1
GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGCUUUUCGCGGCGAAUGGCAGGAGGGUAAAGUAGCAGUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU
(((((........))))).......((.......((((((..(((((......)))))..))))))(((((..((((..(....)..)))).(((((....)))))...))))).)).. ( -31.40)
>consensus
GAAUUUCUUUCUUAGUUCUCUUUUAGCAUUUCUACCUGCCUCUCGAUAUUCGCGGCGAAUGGCAGGAAGGUGAAGCAGCAAUAAUAAUAUUAUUCAGUAAACUGAAACAACCUUGGCCU
(((((........)))))................((((((..(((..........)))..)))))).((((.(((....((((....)))).(((((....))))).....))).)))) (-26.64 = -26.16 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:03 2006