Locus 7467

Sequence ID 3R_DroMel_CAF1
Location 19,940,942 – 19,941,045
Length 103
Max. P 0.559207
window12073

overview

Window 3

Location 19,940,942 – 19,941,045
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 79.09
Mean single sequence MFE -41.15
Consensus MFE -25.94
Energy contribution -25.58
Covariance contribution -0.35
Combinations/Pair 1.56
Mean z-score -1.39
Structure conservation index 0.63
SVM decision value 0.05
SVM RNA-class probability 0.559207
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19940942 103 - 27905053
CAUCUGGAGGUCCUGGGCUGUGCCAGUUUCAUACCCGGCGUGCAGGAGACACUGCAGCUGGAUGACUGCCUCCAGCUCUUUCAGAGAUGCGAACAGCAACAGA
...((((((((.((((......))))..((((..(((((.(((((......))))))))))))))..))))))))(((.....))).(((.....)))..... ( -40.20)
>DroVir_CAF1 807 103 - 1
CACUUGGAGCUGUUGGGCUGCGCCAGUUUUGUGCCGGGCGCACGGGAGACCCAGCAGCUGGACGACUGCCUGCAGCUGUUUCAGCGCUGCGAGGCGCAGCAGA
.......((((((((((.((((((.((.....))..))))))(....).))))))))))......((((.(((.((((...))))(((....)))))))))). ( -45.80)
>DroPse_CAF1 792 103 - 1
CACCUGGAGGUGCUCGGCUGCGCCAGCUUUGUGCCCAGCGUGCAGGAGACCCAGCAGCUGGACGAUUGCCUGCAGCUCUACCAGCGCUGCGAGGCCCAGCAGA
...((((.(((((......)))))....((((..(((((.(((.((....)).))))))))))))..(((((((((.(.....).))))).)))))))).... ( -43.40)
>DroGri_CAF1 810 103 - 1
CAUCUGGAGCUGUUGGGCUGCGCCAGCUUUGUGCCUGGUGCACGGGAGACCCAACAGCUGGAUGACUGCCUGGAGCUGUUCCAGCGCUGUGAAUCGCAACAGA
..((((.((((((((((.(((((((((.....).))))))))(....).)))))))))).(((.((.((((((((...)))))).)).))..)))....)))) ( -46.60)
>DroWil_CAF1 783 103 - 1
CAUUUGGAGUUGUUGGGUUGCGCCAGUUUUGUUCCCGGAGUCCAAGAAACCCAGCAACUGGACGAUUGCCUGCAACUGUUUCAGCGUUGUGAGGCUCAACAAA
..((((.(((((((.((((((.....(((((..(.....)..)))))......)))))).)))))))(((((((((.((....))))))).))))....)))) ( -31.20)
>DroAna_CAF1 913 103 - 1
CACCUGGAGGUGUUGGGAUGCGCCAGCUUUAUUCCGAGCGUGCAGGAAACCCUGCAACUGGACGAUUGUCUGCAGCUCUUCCAGAGAUGCGAGCAGCAACAGA
...(((((((.((((((((.(((((((((......)))).((((((....))))))..))).))...)))).)))).))))))).(.(((.....))).)... ( -39.70)
>consensus
CACCUGGAGGUGUUGGGCUGCGCCAGCUUUGUGCCCGGCGUGCAGGAGACCCAGCAGCUGGACGACUGCCUGCAGCUCUUCCAGCGCUGCGAGGCGCAACAGA
...(((((((.(((((((..((((((((.(((((.....)))))(....).....)))))).))...)))..)))).)))))))..((((........)))). (-25.94 = -25.58 +  -0.35)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:47 2006