| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,919,710 – 19,919,806 |
| Length | 96 |
| Max. P | 0.671461 |
| Location | 19,919,710 – 19,919,806 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 69.72 |
| Mean single sequence MFE | -32.02 |
| Consensus MFE | -11.72 |
| Energy contribution | -13.80 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671461 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19919710 96 + 27905053 UGCCACGCCCC------CAGAAAGGAAACGCCUUGGACAAAUUGUCCCACAGGUCGGAA-----GGGGGA--UGGGCGGUGGCUAAAGCCACAACAACACACAAGGAGC .(((...((((------(.....(....)((((.((((.....))))...)))).....-----))))).--..))).(((((....)))))................. ( -38.10) >DroGri_CAF1 45285 96 + 1 GCACACGCUCC------CUCUCAGGAAGCGCACUGGACAAAUUGGGCCCAAAUGCAAGGGAUAAGAGACA--AG-AAG-CUCCUU-ACUAACAACAGCC--CAAUAAAU .....((((.(------(.....)).))))..........(((((((((........)).....(((...--..-...-)))...-..........)))--)))).... ( -20.10) >DroSim_CAF1 33393 96 + 1 UGCCACGCCCC------CAGAAAGGAAACGCCUUGGACAAAUUGUCCCACAAGUCGGCA-----GGGGGA--UGGGCGGUGGCUAAAGCCACAACAACACACAAGGAGC .(((...((((------(.....(....)(((..((((.....))))........))).-----))))).--..))).(((((....)))))................. ( -36.90) >DroEre_CAF1 33244 94 + 1 UGCCACGCCCC------CAGAAAGGAAACGCCUUGGACAAAUUGUCCCACAAGUCGGCG-----GGGGGA--UGGGCGGUGGCUAAAGCCGCAACAGCA--CAACGAGC .(((...((((------(.....(....)(((..((((.....))))........))).-----))))).--..))).(((((....))))).......--........ ( -36.30) >DroYak_CAF1 34162 100 + 1 UGCCACGCCCC------CAGAAAGGAAACGCCUUGGACAAAUUGUCCCACAACUCGACGGCCG-GGGGGAGUGGGGCAGUGUAUAAAGCCACAACAGCA--CAAGGAGC ..((((.((((------(.....(....)(((..((((.....))))..(.....)..)))..-))))).))))(((..........))).........--........ ( -31.70) >DroAna_CAF1 35312 95 + 1 UGCCACGCCUCCGACCGCCGGAAGGAAACGCCUUGGACAAAUUGUCCCACAAGUCGGUG-----GAUGGG--CAAGCAGCCGCCUAAACCACAACCGCC-------ACC ((((...((.(((((..((....)).........((((.....)))).....))))).)-----)...))--)).((....))................-------... ( -29.00) >consensus UGCCACGCCCC______CAGAAAGGAAACGCCUUGGACAAAUUGUCCCACAAGUCGGCG_____GGGGGA__UGGGCGGUGGCUAAAGCCACAACAGCA__CAAGGAGC ((((...((((............(....).....((((.....))))..................)))).....))))((((......))))................. (-11.72 = -13.80 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:39 2006