| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,633,238 – 2,633,358 |
| Length | 120 |
| Max. P | 0.803080 |
| Location | 2,633,238 – 2,633,358 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.56 |
| Mean single sequence MFE | -25.33 |
| Consensus MFE | -21.96 |
| Energy contribution | -21.63 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.803080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2633238 120 + 27905053 AUCAAGGUCCCAUUUUGAGACUUAGUCACCUACUGGUAGUCAUAAUGGUACAUUAUUCAGAAAUAUGUACAUUUAUACGUACAUAUCUGGUUAAGCUAAAUGGCUUACACUUACUUAAAU ...(((((.(((((.((((((...)))(((....)))..))).))))).)).....(((((..(((((((........)))))))))))).((((((....))))))..)))........ ( -28.20) >DroSec_CAF1 33298 120 + 1 AUCCAGGUCCAAUUUUGAGACAUAGACACUGACUGGUAGUCAUAAUUGUACAUUAUUCAAAAAUAUGUACAUAUAUGCGUACAUAUUUGGUAAAAGUAAAUUGCUUAAAUUUACUUAAAU ..((..((.(((((.(((.((.(((.......)))))..))).))))).)).........((((((((((........))))))))))))...(((((((((.....))))))))).... ( -24.50) >DroSim_CAF1 21531 120 + 1 AUCCAGGUCCAAUUUUGAGACAUAGACACUGACUGGUAGUCAUAAUUGUACAUUAUUCAAAAAUAUGUACAUAUAUGCGUACAUAUUUGGUAAAAGUAAAUGGCUUAAAUUUACUUAAAU ..((..((.(((((.(((.((.(((.......)))))..))).))))).)).........((((((((((........))))))))))))...((((((((.......)))))))).... ( -23.30) >consensus AUCCAGGUCCAAUUUUGAGACAUAGACACUGACUGGUAGUCAUAAUUGUACAUUAUUCAAAAAUAUGUACAUAUAUGCGUACAUAUUUGGUAAAAGUAAAUGGCUUAAAUUUACUUAAAU ......((.(((((.(((.((.(((.......)))))..))).))))).)).....(((((..(((((((........))))))))))))...(((((((((.....))))))))).... (-21.96 = -21.63 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:48 2006