Locus 7418

Sequence ID 3R_DroMel_CAF1
Location 19,743,792 – 19,743,886
Length 94
Max. P 0.596825
window11992

overview

Window 2

Location 19,743,792 – 19,743,886
Length 94
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 80.48
Mean single sequence MFE -27.33
Consensus MFE -18.59
Energy contribution -18.07
Covariance contribution -0.53
Combinations/Pair 1.30
Mean z-score -1.36
Structure conservation index 0.68
SVM decision value 0.13
SVM RNA-class probability 0.596825
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19743792 94 - 27905053
AAGCAUUUAAAUCUUGCUGCCUUUGCCUCUACCGUCGUUGUUUGCACAAGUGCUAAAUGGUUUUUUGGCGCAACGUGACAUCAGCAGAGGGCGG------
.((((.........))))((((((((.......)).((((..(((((..((((((((......))))))))...))).)).)))).))))))..------ ( -25.20)
>DroSec_CAF1 11001 94 - 1
AAGCAUUUAAAUCUUGCUGCCUUUGCCUCUACCGUCGUUGUUUGCACAAGUGCUAAAUGGUUUUUUGGCGCAACGUGACAUCAGCGGAGGGCGG------
.((((.........)))).....((((.((.((((.(.(((...(((..((((((((......))))))))...)))))).).)))))))))).------ ( -28.20)
>DroSim_CAF1 13128 94 - 1
AAGCAUGUAAAUCUUGCUGCCUUUGCCUCUACCGUCGUUGUUUGCACAAGUGCUAAAUGGUUUUUUGGCGCAACGUGACAUCAGCGGAGGGCGG------
..(((.(((.....))))))...((((.((.((((.(.(((...(((..((((((((......))))))))...)))))).).)))))))))).------ ( -28.40)
>DroEre_CAF1 24080 80 - 1
AAGCCUUUAAAUC----UGCUG----CU---C--UUGUUGUUUGCACAAGUGCUAAAUGGCU-UUUGGCGCAACGUGACAUCGGCGGAGUGCAA------
.............----(((.(----((---(--(.((((..(((((..((((((((.....-))))))))...))).)).)))))))))))).------ ( -24.00)
>DroYak_CAF1 24198 86 - 1
AAGCAUUUAAAUCUUGCUGCUG----CU---CUGUUGUUGUUUGCACAAGUGCUAAAUGGCU-UUUGGCGCAACGUGACAUCAGCGGAGGGCGG------
.((((.........))))(((.----((---((((((.(((...(((..((((((((.....-))))))))...)))))).)))))))))))..------ ( -30.20)
>DroAna_CAF1 24493 85 - 1
AAGCAUUUGAAUCUC-----UU----CC---CGCUUGCUGUUUGCUCAAGUGCUAA-U-GCU-UUCGGCGCAACGUGACAUCAGCAGAGGGCGGGAAAAU
...............-----((----((---((((..(((((((.(((.((((..(-.-...-.)..))))....)))))..)))))..))))))))... ( -28.00)
>consensus
AAGCAUUUAAAUCUUGCUGCCU____CU___CCGUCGUUGUUUGCACAAGUGCUAAAUGGCU_UUUGGCGCAACGUGACAUCAGCGGAGGGCGG______
..................................(((((.(((((....((((((((......))))))))....((....))))))).)))))...... (-18.59 = -18.07 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:29 2006