Locus 740

Sequence ID 3R_DroMel_CAF1
Location 2,631,572 – 2,631,672
Length 100
Max. P 0.658069
window1171

overview

Window 1

Location 2,631,572 – 2,631,672
Length 100
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 82.35
Mean single sequence MFE -22.88
Consensus MFE -15.05
Energy contribution -15.55
Covariance contribution 0.50
Combinations/Pair 1.30
Mean z-score -1.77
Structure conservation index 0.66
SVM decision value 0.26
SVM RNA-class probability 0.658069
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2631572 100 + 27905053
ACUUAAGCU-C-UUUGUAUUAGUUGUAAGACA-------GUAGUUAAAAGAGAGUACAAUUUAAAAGCUAAUGUUGCAGAUACCAUUUCUGUUUUGGAGCGAUUUCUUU
......(((-(-(...((((((((...(((..-------(((.((......)).)))..)))...))))))))..(((((.......)))))...)))))......... ( -19.10)
>DroSec_CAF1 31742 101 + 1
ACUUCAGUU-UUUCUCUAUAACUUGUAAGACA-------GUAGUUAAUAGAGAAUACAAUUUAAAAGCUGAUGUUGCAGAAACCAUUUCUGUUUUGGAGCGGUUUCUUU
((.((((((-(((((((((((((((.....))-------..)))).)))))))..........)))))))).))...(((((((.((((......)))).))))))).. ( -25.60)
>DroSim_CAF1 19953 109 + 1
ACUUCAGCUUUUUUUGUAUAACUUGUAAGACAAUAGUGAGUAGUUAAAAGAGAAUACAAUUUAAAAGCUGAUUUUGCAGAAACCAUUUCUGUUUUGGAGCGGUUUCUUU
...(((((((((.((((((..(((.(((.((........))..)))...))).))))))...)))))))))......(((((((.((((......)))).))))))).. ( -26.90)
>DroYak_CAF1 13709 100 + 1
AAUUUAGAG-C-UUUGUAUUAGUUUUAAGACU-------GCAGUUAAAAGACGGUACAAUUUAACAUCUGAUGUUGCAGAAACCAUUUUUGUUUUGAAACGGUUUCUUU
...(((((.-.-.(((((((.(((((..(((.-------...)))..)))))))))))).......)))))......(((((((.((((......)))).))))))).. ( -19.90)
>consensus
ACUUCAGCU_C_UUUGUAUAACUUGUAAGACA_______GUAGUUAAAAGAGAAUACAAUUUAAAAGCUGAUGUUGCAGAAACCAUUUCUGUUUUGGAGCGGUUUCUUU
...((((((....(((((((.(((....(((...........)))....))))))))))......))))))......(((((((.((((......)))).))))))).. (-15.05 = -15.55 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:45 2006