Locus 74

Sequence ID 3R_DroMel_CAF1
Location 491,444 – 491,535
Length 91
Max. P 0.744068
window130

overview

Window 0

Location 491,444 – 491,535
Length 91
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 78.25
Mean single sequence MFE -31.88
Consensus MFE -18.39
Energy contribution -19.62
Covariance contribution 1.23
Combinations/Pair 1.22
Mean z-score -1.80
Structure conservation index 0.58
SVM decision value 0.46
SVM RNA-class probability 0.744068
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 491444 91 + 27905053
GAAGGUCAAACUGGGGCG---UGGGGUUGGGGGUCACAUGUCGAAGUCGGUUCGGGGG-AACCGUA--AAACCAGAUCU---UGCCAGAGACCUUCGCG----U
(((((((...((((((((---((((.(....).)).)))))).....((((((....)-)))))..--...)))).(((---....))))))))))...----. ( -33.10)
>DroVir_CAF1 21355 93 + 1
GAAGGUCAAC----GGCG---U---CUCUGGGGUCACAUGUCAAUGUCGAUUUAUAGA-AGGCGUUAUAAACCAGAUCUCGAUGCCUGCAACCUUCGAGCUUUU
((((((....----((((---(---((((((.(((((((....)))).)))((((((.-.....)))))).)))))....))))))....))))))........ ( -28.40)
>DroSec_CAF1 19440 91 + 1
GAAGGUCAAACUGGGGCG---UGGGGUUGGGGGUCACAUGUCAAAGUCGAUUCGGGGG-AACCGUA--AAACCAGAUCU---UGCCAGAGACCUUCGCG----U
(((((((...((((.(..---.((..(((((((((((........)).))))).((..-..))...--...))))..))---).)))).)))))))...----. ( -29.20)
>DroSim_CAF1 18921 91 + 1
GAAGGUCAAACUGGGGCG---UGGGGUUGGGGGUCACAUGUCAAAGUCGAUUCGGGGG-AACCGUA--AAACCAGAUCU---UGCCAGAGACCUUCGCG----U
(((((((...((((.(..---.((..(((((((((((........)).))))).((..-..))...--...))))..))---).)))).)))))))...----. ( -29.20)
>DroEre_CAF1 21423 89 + 1
GAAGGUCAAACUGGGGUC---UGGGG-UGGGGGUCACGUGUUAAAGUUGAUUCAGG-G-AACCUUA--AAACCAGAUCU---UGCCAUAGACCUUCGCG----U
(((((((.....((((((---(((..-(..((((..(.((............)).)-.-.))))..--)..))))))))---)......)))))))...----. ( -32.80)
>DroAna_CAF1 20258 95 + 1
GAAGGUCAUACAUGGGCUCUUGGGGGUUGGGGGUCACAUGUCAAAGUCGAUUUGGGGGCAACUCUA--AAACCAGAUCC---CCCAAAAGACCUUCGCU----A
(((((((..(((((((((((..(...)..)))))).))))).........((((((((....(((.--.....))).))---)))))).)))))))...----. ( -38.60)
>consensus
GAAGGUCAAACUGGGGCG___UGGGGUUGGGGGUCACAUGUCAAAGUCGAUUCGGGGG_AACCGUA__AAACCAGAUCU___UGCCAGAGACCUUCGCG____U
(((((((.......((((....(((.(((((((((((........)).)))))((......))........)))).)))...))))...)))))))........ (-18.39 = -19.62 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:23 2006