Locus 739

Sequence ID 3R_DroMel_CAF1
Location 2,630,760 – 2,630,874
Length 114
Max. P 0.999813
window1170

overview

Window 0

Location 2,630,760 – 2,630,874
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 97.89
Mean single sequence MFE -32.18
Consensus MFE -30.46
Energy contribution -30.70
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -2.85
Structure conservation index 0.95
SVM decision value 4.14
SVM RNA-class probability 0.999813
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2630760 114 - 27905053
GGAAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGGCCCACUGUCUCAACCCUUUGAUUAGAGCCUA
((..........((((((((((((((.....................)))))))))))).)).(((((((((....((..(((....)))..))...)))))))))....)).. ( -29.20)
>DroSec_CAF1 30868 114 - 1
GGCAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGGCCCACUGUCUCAACCCUUUGAUUAGAGCCUA
(((.........((((((((((((((.....................)))))))))))).)).(((((((((....((..(((....)))..))...)))))))))...))).. ( -33.20)
>DroSim_CAF1 19095 114 - 1
GGCAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGGCCCACUGUCUCAACCCUUUGAUUAGAGCCCA
(((.........((((((((((((((.....................)))))))))))).)).(((((((((....((..(((....)))..))...)))))))))...))).. ( -32.80)
>DroEre_CAF1 20525 114 - 1
GGCAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGACCCACUGUCUCAACCCUUUGAUUAGAGCCUA
(((.........((((((((((((((.....................)))))))))))).)).(((((((((......)))(((.....)))........))))))...))).. ( -31.60)
>DroYak_CAF1 13007 114 - 1
GGCAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGGCCCACUGCGUUAACCCUUUGAUUAGAGCCUA
(((.........((((((((((((((.....................)))))))))))).)).(((((((((....(((.(((....))).)))...)))))))))...))).. ( -34.10)
>consensus
GGCAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGGCCCACUGUCUCAACCCUUUGAUUAGAGCCUA
(((.........((((((((((((((.....................)))))))))))).)).(((((((((....((..(((....)))..))...)))))))))...))).. (-30.46 = -30.70 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:44 2006