| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,629,745 – 2,629,843 |
| Length | 98 |
| Max. P | 0.514537 |
| Location | 2,629,745 – 2,629,843 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 84.03 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -23.82 |
| Energy contribution | -24.02 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2629745 98 + 27905053 GGAGUGGCAAGGUGGACCAACCGCAGGCAUCCUUCGAGGCGGACUGGAAUCACAGUCUUUGUUGAAAAAAUAGUUCCCCGAUU----------------AUAUUAAUUGAGCAG (((...((...((((.....))))..)).)))(((((.(.((((((......)))))).).)))))......((((...((((----------------(...))))))))).. ( -26.80) >DroSec_CAF1 29789 97 + 1 GGAGUGGCAAGGUGGACCAACCGCAGGCAUCCUUCGAGGCGGACUGGAAUCACAGUCUGUGUUGAAAAAGUAGUACCCAGAUU----------------AUUUUAUUUCA-CAG (((...((...((((.....))))..)).)))(((((.((((((((......)))))))).)))))((((((((......)))----------------)))))......-... ( -33.10) >DroSim_CAF1 18005 97 + 1 GGAGUGGCAAGGUGGACCAACCGCAGGCAUCCUUCGAGGCGGACUGGAAUCACAGUCUGUGUUGAAAAAGUAGUACCCAGAUU----------------AUUUUAAUUCA-CAG (((...((...((((.....))))..)).)))(((((.((((((((......)))))))).)))))((((((((......)))----------------)))))......-... ( -33.10) >DroEre_CAF1 19464 108 + 1 GGAGUGGCAAGGUGGACCAACCGCAGGCAUCCUUCGAGGCGGACUGGAAUCACAGUCUUUGGUGAAAUAUUAGUUCCGCGAUUAGAAU-----UUGGCUAUUUCAAUUCA-AAA (((...((...((((.....))))..)).)))...((((.((((((......)))))).((((.((((.((((((....)))))).))-----)).))))))))......-... ( -27.90) >DroYak_CAF1 11887 113 + 1 GGAGUGGCAAGGUGGACCAACCGCAGGCAUCCUUCGAGGCGGACUGGAAUCACAGUCUUUGUUGAAAUAUUAGUUCCGCGAUUGGAAUAUUGGUUGCCUAUUUCAAUCAA-AAA (((((((...((....))..))))(((((.(((((((.(.((((((......)))))).).)))))......((((((....))))))...)).)))))..)))......-... ( -34.60) >consensus GGAGUGGCAAGGUGGACCAACCGCAGGCAUCCUUCGAGGCGGACUGGAAUCACAGUCUUUGUUGAAAAAGUAGUUCCCCGAUU________________AUUUUAAUUCA_CAG (((...((...((((.....))))..)).)))(((((.(.((((((......)))))).).)))))................................................ (-23.82 = -24.02 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:41 2006