Locus 7367

Sequence ID 3R_DroMel_CAF1
Location 19,538,927 – 19,539,035
Length 108
Max. P 0.631755
window11910

overview

Window 0

Location 19,538,927 – 19,539,035
Length 108
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 82.10
Mean single sequence MFE -21.29
Consensus MFE -16.07
Energy contribution -16.35
Covariance contribution 0.28
Combinations/Pair 1.22
Mean z-score -1.49
Structure conservation index 0.75
SVM decision value 0.20
SVM RNA-class probability 0.631755
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19538927 108 + 27905053
ACCAUAUUUCUCCAUAUGUUUGUUGUAAAAACUAAGUUUAUCUUCUAGAUAAGCGCCAGCAUAGGAGCUCUGCAAGGAAAAACAUAAAUAAAUA------CAAAUGGAAAAAUC
.....((((.(((((.(((...((((.........(((((((.....)))))))((.(((......)))..))..............))))..)------)).))))).)))). ( -20.60)
>DroSec_CAF1 7559 112 + 1
ACCAUAUUUCUCCAUGUGCUUGUUGUAAAAACUAAGUUUAUCCUCUAGAUAAGCGCCAGCAUAGGAGCUCUGCAAAGGAAAACAUAAAUAAAUAAA--UGAAAAUGGAAAAAUC
.((((....((((.((((((.(((.....)))...(((((((.....)))))))...)))))))))).(((.....))).................--.....))))....... ( -22.20)
>DroSim_CAF1 7296 112 + 1
ACCAUAUUUCUCCAUGUGCUUGUUGUAAAAACUAAGUUUAUCCUCUAGAUAAGCGCCAGCAUAGGAGCUCUGCAAAGGAAAACAUAAAUAAAUAAA--UGAAAAUGGAAAAAUC
.((((....((((.((((((.(((.....)))...(((((((.....)))))))...)))))))))).(((.....))).................--.....))))....... ( -22.20)
>DroEre_CAF1 7504 108 + 1
GCCAUAUUUCUCCAUGUGCUUGUUGUAAAAACUAAGUUUAUCUUCUAGAUAAGCGCCAGCAUAAGAGCUCUGCAAGGAAAAAGAUACAGAAA------UUGAAAUGGAAAAAUC
.....((((.(((((.......(((((........(((((((.....)))))))((.(((......)))..))...........)))))...------.....))))).)))). ( -20.26)
>DroYak_CAF1 11918 114 + 1
ACCAUAUUUCUCCAUGUGUUUGUUGUAGAAACUGAGUUUAUCUUCUAGAUAAGCGCCAGCAUAAGAGCUCUGCAAAAAGAGACAAGCAUAAAUAAAAUUAAAAAUGGAAACAUC
..............(((((((((........(((.(((((((.....)))))))..)))........((((......))))))))))))).............(((....))). ( -25.00)
>DroMoj_CAF1 8109 99 + 1
UCCAUAUUUCUCCAUGUGCUUGUUGUAAAAGAUGAGCUUAUCCUCCAGAUACGCACCCGCAUAGGAGCUCUGCAAUGGCCAAU---------------UGAAAAUGCAUCCAUG
..............((((((..((......))..)((.((((.....)))).))....)))))(((((....((((.....))---------------)).....)).)))... ( -17.50)
>consensus
ACCAUAUUUCUCCAUGUGCUUGUUGUAAAAACUAAGUUUAUCCUCUAGAUAAGCGCCAGCAUAGGAGCUCUGCAAAGAAAAACAUAAAUAAAUA____UGAAAAUGGAAAAAUC
.((((....((((.((((((.(((.....)))...(((((((.....)))))))...)))))))))).(((....))).........................))))....... (-16.07 = -16.35 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:10 2006