Locus 7356

Sequence ID 3R_DroMel_CAF1
Location 19,485,328 – 19,485,432
Length 104
Max. P 0.541026
window11892

overview

Window 2

Location 19,485,328 – 19,485,432
Length 104
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 93.10
Mean single sequence MFE -19.02
Consensus MFE -14.92
Energy contribution -15.36
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.50
Structure conservation index 0.78
SVM decision value 0.01
SVM RNA-class probability 0.541026
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19485328 104 + 27905053
UAAUGGCCACAACAGAAAUAAUUACAUCAACGCUGG-GGAGAAAUGCUUUGAAAAGCUAAACAAAUUAUUAGCCAAGUGCACUUCUAACUAAACAUUCAAACGGC
.....(((......((..........)).....(((-..((((.(((((((....(((((........))))))))).))).))))..)))...........))) ( -16.50)
>DroSec_CAF1 84348 104 + 1
UAAUGGCCACAACAGAAAUAAUUACAUGAACGCAGG-GGAGAAAUGCUUUGAAAAGCUAAACAAAUAAUUAGCCAAGUGCACUUCUAACUAAACAUUCAAACGGC
.....(((.....(....).......((((.(..((-..((((.(((((((....(((((........))))))))).))).))))..))...).))))...))) ( -16.90)
>DroSim_CAF1 93957 104 + 1
UAAUGGCCACAACAGAAAUAAUUACAUCAACGCAAG-GGAGAAGUGCUUUGAAAAGCUAAACAAAUUAUUAGCCAAGUGCACUUCUAACUAAACAUUCAAACGGC
.....(((......................(....)-..((((((((((((....(((((........))))))))).))))))))................))) ( -22.00)
>DroEre_CAF1 85236 105 + 1
UAAUGGCCACAACCGAAAUAAUUACAUCAACGCAUGAGGAGAAAUGCUUUGAAGAGCUAAACAAAUUAUUAGCCAAGUGCAUUUCUAACUGAGAAUUCAAACGGC
.....(((..................(((.....)))..((((((((((((....(((((........))))))))).))))))))................))) ( -18.10)
>DroYak_CAF1 97109 104 + 1
UAAUGGCCACAACAGAAAUAAUUACAUCAACGCAAG-GCAGAAAUGCUUUGAGGAGCUAAACAAAUUAUUAGCCAAGUGCUUUUCUAACUGAAAAUUCAAACGGC
.....(((.....(((((....(((.((....((((-(((....)))))))..))(((((........)))))...)))..)))))...(((....)))...))) ( -21.60)
>consensus
UAAUGGCCACAACAGAAAUAAUUACAUCAACGCAAG_GGAGAAAUGCUUUGAAAAGCUAAACAAAUUAUUAGCCAAGUGCACUUCUAACUAAACAUUCAAACGGC
.....(((......................(....)...((((((((((((....(((((........))))))))).))))))))................))) (-14.92 = -15.36 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:52 2006