Locus 7351

Sequence ID 3R_DroMel_CAF1
Location 19,453,098 – 19,453,203
Length 105
Max. P 0.645535
window11885

overview

Window 5

Location 19,453,098 – 19,453,203
Length 105
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 66.44
Mean single sequence MFE -36.48
Consensus MFE -9.22
Energy contribution -9.55
Covariance contribution 0.33
Combinations/Pair 1.43
Mean z-score -2.10
Structure conservation index 0.25
SVM decision value 0.23
SVM RNA-class probability 0.645535
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19453098 105 + 27905053
---UGCAAUUGCUGGCGAUAUCGAAAGCGCUGAAGGCGCUGUGCCAACGGCGUCGAUUGAGCUGCCGCUGCGACCGCCGGUCGAUAGCUGCAAAAAAA---AAAGCGGGAA
---.((....(((..((....))..)))(((.(.((((((((....))))))))...).)))(((.(((((((((...))))).)))).)))......---...))..... ( -40.10)
>DroPse_CAF1 64576 102 + 1
AGUUGCAAUUGCUGUCGAUAUCGGAAUCGCUGCAAUCGCUCUGCUAGCGGUGUGGACUGCGCUGU---------CGCUGUGCGAAGGCUGCAAAGAGAGCAACAACAAAAA
.((((...(((((.(((((......)))((.((..((((.(.((..(((((((.....)))))))---------.)).).))))..)).))...)).)))))))))..... ( -35.70)
>DroSim_CAF1 61328 95 + 1
------------UGGCGAUAUCGAAAGCGCUGAAGGCGCUGUGCCAACGGCGUCGAUUGAGCUGCCGCUGCGACCGCCGGUCGAUAGCUGCAAAAA-A---AAAGCGGGAA
------------.(((...((((...((((((..(((.....)))..))))))))))...)))((.(((((((((...))))).)))).)).....-.---.......... ( -35.20)
>DroWil_CAF1 50580 92 + 1
---UGCUGUUGCUGGCGGUUGCGGAAUCUCUGCAAUCGCUCGGCUAGCGGUGCUGACCGCCCUACCGUU---------GCCUGAUAGCUGUAAAUAGAGCAAAA-------
---.((((((((((((((((((((.....)))))))))).))))(((((((((.....))...))))))---------)...))))))................------- ( -36.50)
>DroYak_CAF1 62342 93 + 1
AACUGCAAUUGCUGGCGAUAUCGAAAGCGCUGCAGGCGCUGUGCCAGCGGCGUCGAUUGAGCU---------------GGUCGAUAGCUGUAAAAAAA---AAAGCGGGAA
..((((....(((((((........(((((.....))))).)))))))((((((((((.....---------------))))))).))).........---...))))... ( -35.50)
>DroPer_CAF1 66623 108 + 1
AGUUGCAAUUGCUGUCGAUAUCGGAAUCGCUGCAAUCGCUCUGCUAGCGGUGUGGACUGCGCUGUCGCUG---UCGCUGUGCGAAGGCUGCAAAGAGAGCAACAACAAAAA
.((((..(((((.(.((((......))))).))))).(((((.((.(((((....)))))..(((.(((.---((((...)))).))).))).)))))))..))))..... ( -35.90)
>consensus
___UGCAAUUGCUGGCGAUAUCGAAAGCGCUGCAAGCGCUCUGCCAGCGGCGUCGACUGAGCUGCCGCU_____CGC_GGUCGAUAGCUGCAAAAAGA___AAAGCGGGAA
...((((...((((.(((..((((..(((((((.(.........).)))))).)..))))....................))).))))))))................... ( -9.22 =  -9.55 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:46 2006