Locus 733

Sequence ID 3R_DroMel_CAF1
Location 2,609,699 – 2,609,819
Length 120
Max. P 0.783111
window1159

overview

Window 9

Location 2,609,699 – 2,609,819
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -40.93
Consensus MFE -38.12
Energy contribution -39.38
Covariance contribution 1.25
Combinations/Pair 1.07
Mean z-score -1.76
Structure conservation index 0.93
SVM decision value 0.56
SVM RNA-class probability 0.783111
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2609699 120 + 27905053
GUCGAUGGACAUGCAGGCGGUCUAAGUUUCAGUUUCAGGGAGACAUGAGACCUACACCAAUGCGUAAAUAUGGAGCACAUCAUUAAUUAUGCCCAUGGGCCUGCGUUUGCCGUUGAGCCG
.(((((((..(((((((((((.((.(((((((((((...))))).)))))).)).)))..........(((((.(((.(........).)))))))).))))))))...))))))).... ( -44.60)
>DroSim_CAF1 73789 120 + 1
GUCGAUGGACAUGCAGGCGGUCCAAGUUUCAGUUUCAGGGAGACAUGAGACCUACACCAAUGCGUAAAUAUGGAGCACAUCAUUAAUUAUGCCCAUGGGCCUGCGUUUGCCGCUGAGCCG
.(((.(((..((((((((((((((.(((((.........))))).)).))))....(((..((((((..((((......))))...))))))...)))))))))))...))).))).... ( -39.70)
>DroEre_CAF1 78439 120 + 1
GUCGAUGGACAUGCAGGCGGUCUAAGUUCCAGUUUCAGGGAGACAUGAGACCUACACCAAUGCGUAAAAAUGGAGCACAUCAUUAAUUAUGCCCAUGGGCCUACGUUUGCCGCUGAGCCG
(((....)))..((.((((((....((((((((((((.(....).)))))).(((........)))....))))))..............(((....)))........))))))..)).. ( -35.30)
>DroYak_CAF1 76950 120 + 1
GUCGGUGGACAUGCAGGCGGUCUAAGUUUCAGUUUUAGGGACACAUGAGACCUACACCAAUGCGUAAAUAUGGAGUACAUCAUUAAUUAUGCCCAUGGGCCUGCGUUUGCCGCUGAGCCG
.(((((((..(((((((((((((..((..(.......)..)).....)))))....(((..((((((..((((......))))...))))))...)))))))))))...))))))).... ( -44.10)
>consensus
GUCGAUGGACAUGCAGGCGGUCUAAGUUUCAGUUUCAGGGAGACAUGAGACCUACACCAAUGCGUAAAUAUGGAGCACAUCAUUAAUUAUGCCCAUGGGCCUGCGUUUGCCGCUGAGCCG
.(((((((..(((((((((((.((.(((((((((((...))))).)))))).)).)))..........(((((.(((.(........).)))))))).))))))))...))))))).... (-38.12 = -39.38 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:33 2006