Locus 731

Sequence ID 3R_DroMel_CAF1
Location 2,608,918 – 2,609,031
Length 113
Max. P 0.670188
window1153

overview

Window 3

Location 2,608,918 – 2,609,031
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.30
Mean single sequence MFE -42.67
Consensus MFE -30.61
Energy contribution -32.61
Covariance contribution 2.00
Combinations/Pair 1.03
Mean z-score -1.88
Structure conservation index 0.72
SVM decision value 0.29
SVM RNA-class probability 0.670188
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2608918 113 - 27905053
CUGAGGGAAGGAGUGGUUGGUGGGUGUCAUUUCUGGG-GG------GUGCCACCCGCACUCAGCUAAUCAACGCAACCUCAAAAUGUAAAUAAGGCCGAAACCAUCGUCGAGGGCUCGGU
.(((((....((.(((((((((((((.(((..(...)-..------))).)))))))...)))))).)).......))))).............(((((..((........))..))))) ( -39.60)
>DroSim_CAF1 72950 113 - 1
CUGAGGGAAGGAGUGGUUGGUGGGUGGCAUUUCUGGG-GG------GUGCCACCCGCACUCAGCUAAUCAACGCGACCUCAAAAUGUAAAUAAGGCCGAAACCAUCGUCGAGGGCUCGGU
.(((((....((.(((((((((((((((((..(...)-..------)))))))))))...)))))).)).......))))).............(((((..((........))..))))) ( -46.70)
>DroEre_CAF1 77611 120 - 1
CUAAAAGAUUUGGUGAGUGGUGGGUGGCAUAUCUGGGGGGAGGGGAGUGCCACCCGCACUCAGCUAAUCAACGCGACCUCAAAAUGUAAAUAAGGCCGAAACCAUCGUCGAGGGCUCGGU
......((((.(.((((((.((((((((((.(((........))).)))))))))))))))).).)))).........................(((((..((........))..))))) ( -44.60)
>DroYak_CAF1 76119 114 - 1
CUGAAAGAGGGGGUGAGUGGUGUGUGGCAUAUCUUGGGGG------GUGCCACCCGCACUCAGCUAAUCAACGCGACCUCAAAAUGUAAAUAAGGCCGAAACCAUCGUCGAGGGUUCGGU
......((((((.((((((.((.(((((((..(....)..------))))))).)))))))).))..((.....))))))..............((((((.((........)).)))))) ( -39.80)
>consensus
CUGAAAGAAGGAGUGAGUGGUGGGUGGCAUAUCUGGG_GG______GUGCCACCCGCACUCAGCUAAUCAACGCGACCUCAAAAUGUAAAUAAGGCCGAAACCAUCGUCGAGGGCUCGGU
.(((((.......((((((.((((((((((................))))))))))))))))((........))..))))).............(((((..((........))..))))) (-30.61 = -32.61 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:28 2006