| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,255,928 – 19,256,030 |
| Length | 102 |
| Max. P | 0.650456 |
| Location | 19,255,928 – 19,256,030 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.42 |
| Mean single sequence MFE | -25.23 |
| Consensus MFE | -12.64 |
| Energy contribution | -13.17 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19255928 102 - 27905053 CUGCU----UAAAUUAGUAAAUU-CCGUGAGCAGGCCAAGCGCU----UGGGAAGCAAUAAUUAUAUACUAAUUAAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCGACU .((((----......))))....-.(((..((((.((((....)----)))..(((..((((((((..((.....))..)))))))))))........))))...)))... ( -23.20) >DroPse_CAF1 66166 107 - 1 CUGUC----CAAAUCAGUCACUCGAUGGGAGCAAGGCAAGCGCCUGCCUGGCCAGCAAUAAUUAUAUACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCAACA ((((.----((..((.(((.(((.....)))..(((((......)))))))).(((..((((((((..(((...)))..))))))))))).....))..)).))))..... ( -23.50) >DroEre_CAF1 52740 102 - 1 CAGUU----UAAAUUAGUAAAUU-CCGUGAGCAGACCAAGCGCU----CGGGCAGCAAUAAUUAUAUACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCGACU (((((----(.(((((((....(-(((.(.((.......)).).----))))......((((((((..(((...)))..))))))))))))))).)))))).......... ( -25.00) >DroWil_CAF1 89558 102 - 1 CCGCUUCGCAAAAUUAGUCACUCUCCAUGGGCA-----UGCGCC----CGGCUAGCAAUAAUUAUACACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCAAAA ..(((.((((...(((((.........(((((.-----...)))----))..((((..(((((((((.(((...))).))))))))))))))))))...)))).))).... ( -29.60) >DroAna_CAF1 53635 91 - 1 UCGCA----CAAAUUAGUCACUCGGCUUGAGCAAGCC----------------AGCAAUAAUUAUAUACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCAACU .((((----(.(((((((.....(((((....)))))----------------.....((((((((..(((...)))..))))))))))))))).)...))))........ ( -21.20) >DroPer_CAF1 66293 107 - 1 CUGGC----CAAAUCAGUCACUCGAUGGGAGCAAGGCAAGCGCCUGCCUGGCCAGCAAUAAUUAUAUACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCAACA .((((----((..((.(((....)))..))(((.(((....)))))).))))))((..((((((((..(((...)))..))))))))((...........))))....... ( -28.90) >consensus CUGCU____CAAAUUAGUCACUCGCCGUGAGCAAGCCAAGCGCC____UGGCCAGCAAUAAUUAUAUACUAAUUUAGCGUAUAAUUAGCUAAUUAGAACUGCGCAGCAACA .......................................((((..........(((..(((((((((.((.....)).))))))))))))..........))))....... (-12.64 = -13.17 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:18 2006