Locus 729

Sequence ID 3R_DroMel_CAF1
Location 2,602,061 – 2,602,181
Length 120
Max. P 0.950173
window1148

overview

Window 8

Location 2,602,061 – 2,602,181
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 87.10
Mean single sequence MFE -40.76
Consensus MFE -33.69
Energy contribution -33.84
Covariance contribution 0.16
Combinations/Pair 1.19
Mean z-score -3.03
Structure conservation index 0.83
SVM decision value 1.40
SVM RNA-class probability 0.950173
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2602061 120 + 27905053
CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAAAUGGCGUUCGGCACAUUGUCGGACUGCUGGCUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACCU
..((((..((((.(((((...((((((((((......(((((((((((.....))))))).))))..........))))))))))...)))))))))..)))).((((........)))) ( -44.19)
>DroPse_CAF1 75970 120 + 1
CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAUAUUGCGCCCGAUGUAUUUUCGAGUGUUUGUGUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACAA
((((((..((((.(((((...((((((((((.((((((.((((.(((.......))).))))..)))).))....))))))))))...)))))))))..)))).)).............. ( -38.70)
>DroEre_CAF1 70249 119 + 1
CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAAAUGGCGUUCGACGC-UUGUCGGAUUGCUGGCUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAUAAACCU
..((((..((((.(((((...((((((((((......(((((((((((..-..)))))).)))))..........))))))))))...)))))))))..)))).((((........)))) ( -42.29)
>DroMoj_CAF1 79851 109 + 1
CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAUAGUGCAUACGA-----------AUGCCAUUGUCAAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACAA
((((((..((((.(((((...((((((((((.(((((((((((....-----------))).)))))).))....))))))))))...)))))))))..)))).)).............. ( -35.60)
>DroAna_CAF1 60231 120 + 1
CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAUAUUGCGUUCGAUGCAUUGUCGGACUGCUGGCUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACAA
((((((..((((.(((((...((((((((((...((...(((((((((.....))))))).)).......))...))))))))))...)))))))))..)))).)).............. ( -40.30)
>DroPer_CAF1 76373 120 + 1
CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAUAUUGCGCUCGAUGUAUUUUCGAGUGUUUGUGUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACAA
((((((..((((.(((((...((((((((((.((((((.((((((((.......))))))))..)))).))....))))))))))...)))))))))..)))).)).............. ( -43.50)
>consensus
CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAUAUUGCGUUCGAUGCAUUGUCGGAUGGCUGGCUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACAA
((((((..((((.(((((...((((((((((..........(((((((.....)))))))...............))))))))))...)))))))))..)))).)).............. (-33.69 = -33.84 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:22 2006