| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,215,363 – 19,215,454 |
| Length | 91 |
| Max. P | 0.972819 |
| Location | 19,215,363 – 19,215,454 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 64.95 |
| Mean single sequence MFE | -26.13 |
| Consensus MFE | -11.94 |
| Energy contribution | -11.83 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.46 |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.972819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19215363 91 + 27905053 GCUCGCCUGCAAUUGCACGUACUUGUAAUUGCAUAA-AGGGUAACGGUAUAUGUUAUACCU-------UAGUAUAUGGUUU---A--------UGGUAUAUGGUA-----UAUAU ((((...((((((((((......))))))))))...-.))))....((((((..((((((.-------(((........))---)--------.))))))..)))-----))).. ( -25.50) >DroPse_CAF1 24494 101 + 1 GCUCUGUGCCAAUUGCACGUACUUGUAAUUGCAUAA-AGGGUAACGGCACUUGCUGCUC--UG--------UCUGUGGCAGUUCCUGCCCCCCUGCCCCCCAGUCCACCGC---U ((..(((((.(((((((......)))))))))))).-.(((((..((((...((((((.--..--------.....))))))...))))....)))))...........))---. ( -31.50) >DroSec_CAF1 11647 83 + 1 GCUCGCCAGCAAUUGCACGUACUUGUAAUUGCAUAA-AGGGUAACGGGAUAUGGUAUAAGC----------UAUAUGGUAU---A--------AGGUAUAUGGUA---------- ....(((((((((((((......)))))))))....-.(.....)......))))....((----------((((((.(..---.--------.).)))))))).---------- ( -19.70) >DroSim_CAF1 11774 80 + 1 GCUCGCCAGCAAUUGCACGUACUUGUAAGUGCAUAA-AGGGUAACGGGAUAUGGUAUAAGC----------UAUAUGGUAU---A--------AGGUAUAUG------------- .((((((......(((((.((....)).)))))...-..))...))))(((((((....))----------))))).....---.--------.........------------- ( -15.90) >DroEre_CAF1 12102 101 + 1 GCCUGGCUGCAAUUGCACGUACUUGUAAUUGCAUAAAAGGGUAACGGGAUGUGGUAUAUGCUACAUGGU---AUAUGCUAC---A--------UGGCAUAUGGUAUAUGGCGUAU ((((...((((((((((......)))))))))).....)))).(((..(((((.(((((((((..((((---....)))).---.--------))))))))).)))))..))).. ( -35.60) >DroYak_CAF1 12165 91 + 1 GCCUGGCUGCAAUUGCACGUACUUGUAAUUGCAUAA-AGGGUAACGG-------UAUAUGCUACAGGUUACCAUAUGCUAU---A--------UGGUACAAGGG-----GUAUAU ((((...((((((((((......))))))))))...-.)))).....-------.(((((((....((.(((((((...))---)--------))))))....)-----)))))) ( -28.60) >consensus GCUCGCCUGCAAUUGCACGUACUUGUAAUUGCAUAA_AGGGUAACGGGAUAUGGUAUAAGC__________UAUAUGGUAU___A________UGGUAUAUGGUA_________U ((((....(((((((((......)))))))))......))))......................................................................... (-11.94 = -11.83 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:53 2006