Locus 726

Sequence ID 3R_DroMel_CAF1
Location 2,586,305 – 2,586,400
Length 95
Max. P 0.639912
window1144

overview

Window 4

Location 2,586,305 – 2,586,400
Length 95
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 79.64
Mean single sequence MFE -34.22
Consensus MFE -18.58
Energy contribution -21.11
Covariance contribution 2.53
Combinations/Pair 1.14
Mean z-score -1.97
Structure conservation index 0.54
SVM decision value 0.22
SVM RNA-class probability 0.639912
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2586305 95 + 27905053
UUUGCUUUUGGGAUCUGGCAGGAGCUUGUUGCUGUUGGCCGGGCUUUGCUGCUUCUG------------CCGC-------UGCCAACUGGCAACAAAAGUCAAUUCACAGACAC
...(((((((........)))))))((((((((((((((.((((............)------------)).)-------.)))))).))))))))..(((........))).. ( -34.10)
>DroSec_CAF1 50082 95 + 1
UUUGCUUUUGGGAUCUGGCAUGAGCUUGUUGCUGUUGGCCGGGCUUUGCUGCUUCUG------------CUGC-------UGCCAACUGGCAACAAAAGUCAAUUCACAGACAC
...((((.((........)).))))((((((((((((((..(((...((.......)------------).))-------))))))).))))))))..(((........))).. ( -30.60)
>DroSim_CAF1 50663 95 + 1
UUUGCUUUUGGGAUCUGGCAGGAGCUUGUUGCUGUUGGCCGGGCUUUGCUGCUUCUG------------CCGC-------UGCCAACUGGCAACAAAAGUCAAUUCACAGACAC
...(((((((........)))))))((((((((((((((.((((............)------------)).)-------.)))))).))))))))..(((........))).. ( -34.10)
>DroEre_CAF1 53323 101 + 1
UUUGCUCUCGGGAUCUGGCAGGAGCUUGUUGCUGUUGGCCGGGCUUUGCUGCUCCUGCCACC------GCCA-------CUGCCAACUGGCAACAAAAGUCAAUUCACAGACAC
((((......((...((((((((((..((.(((........)))...)).))))))))))..------.)).-------.((((....)))).)))).(((........))).. ( -35.40)
>DroYak_CAF1 52928 114 + 1
UUUGCUCUUGGGAUCCGGCAGGAGCUUGUUGCUGUUGGGCGGGCUUUGCUGCUCCUGCUUCUGCUUCUGCCGCUGCCAACUGGCAACUGGCAACAAAAGUCAAUUCACAGACAC
.(((((.((((.(..((((((((((.....((....((((((......))))))..))....)))))))))).).))))..))))).((....))...(((........))).. ( -41.50)
>DroPer_CAF1 60301 86 + 1
UUUGCUUUGUGGAUGUGGCAAG---UAGUUUCUGUG-----------GCAACUUCUG------------CCACUGC--UCUGCCAACUGGCAACAAAAGUCAAUUCAUAGGCAG
..(((((.((((((.((((.((---.(((....(((-----------(((.....))------------)))).))--)))(((....))).......))))))))))))))). ( -29.60)
>consensus
UUUGCUUUUGGGAUCUGGCAGGAGCUUGUUGCUGUUGGCCGGGCUUUGCUGCUUCUG____________CCGC_______UGCCAACUGGCAACAAAAGUCAAUUCACAGACAC
...(((((((........)))))))((((((((((((((.((((......))))...........................)))))).))))))))..(((........))).. (-18.58 = -21.11 +   2.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:16 2006