| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,106,883 – 19,106,974 |
| Length | 91 |
| Max. P | 0.759815 |
| Location | 19,106,883 – 19,106,974 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 76.35 |
| Mean single sequence MFE | -25.97 |
| Consensus MFE | -14.08 |
| Energy contribution | -14.19 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.759815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19106883 91 - 27905053 AUACAAGUUUUCCGCCGCUGGUAAUAACUCAUUU-----GAACAUA-GUGGCAACUCUGUGCAAAACAGCUGUAUUGUUGCCAUUCACUGGAAA-C-AG ......((((((.(....(((((((((..((.((-----(..((((-(.(....).))))).....))).))..)))))))))....).)))))-)-.. ( -23.10) >DroVir_CAF1 24155 93 - 1 UUAG---CUUAGCUCUGCCGGCAAGCGCUGGUAUGAAACGAGUAG-UCUGGCAACGCUGUCGGGAACAGCUGCUU--UUGCCAUUCACACAAAAAACAG ...(---(((...(((((((((....))))))).))...)))).(-..((((((.((.((.(....).)).))..--))))))..)............. ( -25.90) >DroSec_CAF1 22829 91 - 1 AUGCAAGUUUGCCGCCGCUUGUAAUUACUUAUUU-----GAACAUA-CUGGCAACGCUGUGAAAAACAGCUGUAUUGUUGCCAUUCACUGGAAA-C-AG .(((((((........)))))))..........(-----(((....-.((((((((((((.....)))))......)))))))))))(((....-)-)) ( -26.50) >DroSim_CAF1 23506 91 - 1 AUGCAAGUUUGCCGCCGCUUGUAAUUACUUAUUU-----GAACAUA-CUGGCAACGCUGUGCAAAACAGCUGUAUUGUUGCCAUUCACUGGAAA-C-AG .(((((((........)))))))..........(-----(((....-.((((((((((((.....)))))......)))))))))))(((....-)-)) ( -26.50) >DroEre_CAF1 23239 92 - 1 AUAAAAGUUCUCCGCCGCUGGUAUUAACUUAUUU-----GAGCACGUCUGGCAACGCUAUGCAGCACAGCUGUGUAGUUGCCAUUCACUGGAAA-C-CG ......(((.(((...(((.(.((......)).)-----.)))..(..(((((..((((((((((...)))))))))))))))..)...)))))-)-.. ( -26.40) >DroYak_CAF1 23182 92 - 1 AUAAAAGUUCUCCGCCGCUGGUAUUAACUUAUUU-----GAGCAUGUCUGGCAACGCUGUGCAACACAGCUGUGUAGUUGCCAUUCACUGGGAA-C-AG ......((((.((...(((.(.((......)).)-----.))).((..(((((((((((((...))))))......)))))))..))..)))))-)-.. ( -27.40) >consensus AUACAAGUUUUCCGCCGCUGGUAAUAACUUAUUU_____GAACAUA_CUGGCAACGCUGUGCAAAACAGCUGUAUUGUUGCCAUUCACUGGAAA_C_AG ......((((.........(((....)))..........)))).....((((((((((((.....)))))......)))))))................ (-14.08 = -14.19 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:15 2006