Locus 725

Sequence ID 3R_DroMel_CAF1
Location 2,579,088 – 2,579,182
Length 94
Max. P 0.787772
window1143

overview

Window 3

Location 2,579,088 – 2,579,182
Length 94
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 86.06
Mean single sequence MFE -26.48
Consensus MFE -20.50
Energy contribution -21.72
Covariance contribution 1.22
Combinations/Pair 1.09
Mean z-score -2.75
Structure conservation index 0.77
SVM decision value 0.58
SVM RNA-class probability 0.787772
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2579088 94 - 27905053
UAUCAAGCCAGCCAGAAAAUGAAGACCGAAGCAUCAAC--CAACAACGGCAUGUGCUCCAGCGCCGACCUCAGCGAGAUCUUGGAGCAUCUGGCUC
.........(((((((..............((((...(--(......)).))))((((((((((.(....).))).....))))))).))))))). ( -26.50)
>DroSec_CAF1 43317 94 - 1
UAUCAACCCAGCCAGAAAAUUAAGACCGAAGCAUCAAC--CAACAACAGCAUGUGCUCCAGCGCCGAUCUCAGCGAGAUCUUGGAGCAUCUGGCUC
.........(((((((..............((......--........))...((((((((....((((((...))))))))))))))))))))). ( -28.14)
>DroSim_CAF1 43553 94 - 1
UAUCAACCCAGCCAGAAAAUUAAGACCGAAGCAUCAAC--CAACAACAGCAUGUGCUCCAGCGCCGAUCUCAGCGAGAUCUUGGAGCAUCUGGCUC
.........(((((((..............((......--........))...((((((((....((((((...))))))))))))))))))))). ( -28.14)
>DroEre_CAF1 45779 94 - 1
UAUCAAGCCAGCCAGAAAAUAAAGAGCGAAGUGUCAAC--CAACAACAGCAUGUGCUCCAGCGCCGAUCUCAGCGAGAUCUUGGAGCACCUGGCUC
.........((((((..........((....(((....--..)))...))..(((((((((....((((((...))))))))))))))))))))). ( -32.50)
>DroYak_CAF1 44945 94 - 1
UAUCAGGACAGCCAGAAUAUAAAGAGCGAAGUAUCAAC--CAACAACAGCAUGUGCUCCAGCGCCGAUCUCAGCGAGAUCUUGGAGCACCUGGCUC
.........((((((..........((...((......--..))....))..(((((((((....((((((...))))))))))))))))))))). ( -30.10)
>DroPer_CAF1 52855 85 - 1
---CAAGCCAUCCCCAAUAU-----CUCAAACAACAACAACAACAACAGCAUGUGCUCC---UCCGAUCUCAGCGAGAUCCUGGAACAUCUCGCAC
---.................-----.......................((..(((.(((---...((((((...))))))..))).)))...)).. ( -13.50)
>consensus
UAUCAAGCCAGCCAGAAAAUAAAGACCGAAGCAUCAAC__CAACAACAGCAUGUGCUCCAGCGCCGAUCUCAGCGAGAUCUUGGAGCAUCUGGCUC
.........((((((...............((................))..(((((((((....((((((...))))))))))))))))))))). (-20.50 = -21.72 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:15 2006