Locus 724

Sequence ID 3R_DroMel_CAF1
Location 2,573,786 – 2,573,876
Length 90
Max. P 0.500000
window1142

overview

Window 2

Location 2,573,786 – 2,573,876
Length 90
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 80.79
Mean single sequence MFE -25.25
Consensus MFE -16.06
Energy contribution -15.62
Covariance contribution -0.44
Combinations/Pair 1.29
Mean z-score -1.42
Structure conservation index 0.64
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2573786 90 + 27905053
AAACGAAUCGCGUGGCAACUCGGGGUUGUACUAUUUAUGGCCCAUAAUCAACUGGUUGCGUAGCAACAAU----AUG-UUUUUGG----GCAUGGGAAU
..((.((((.((.(....).)).))))))....((((((.((((.((.((....(((((...)))))...----.))-.)).)))----)))))))... ( -24.10)
>DroSec_CAF1 37919 90 + 1
AAACGAAUCGCGUGGCAACUUGGGGUUGUGCUAUUUAUGGCUUAUAACCAACUGGUUGCGUGGCAACAUU----AUG-UUUUUGG----GCAAUGGGAA
...((((..(((((((((((...((((((((((....))))..))))))....))))))(((....))))----)))-).)))).----.......... ( -24.60)
>DroSim_CAF1 38116 90 + 1
AAACGAAUCGCGUGGCAACUCGGGGUUGUACUAUUUAUGGCCCAUAACCAACUGGUUGCGUAGCAACAUU----AUG-UUUUUGG----GCAUUGAAGA
..((.((((.((.(....).)).))))))....((((..(((((.((.((....(((((...)))))...----.))-.)).)))----))..)))).. ( -24.00)
>DroEre_CAF1 40210 91 + 1
AAACGAUUCGCGUGGCAACUCGGGGUUGUACUAUUUAUGGCCCAUAACCAACUGGUUGCCUAGCAAUAUU----ACGCUUUUUAG----GCAUUAUAAG
..........((.(....).))((((..((.....))..))))..((((....))))(((((((......----..)))....))----))........ ( -23.00)
>DroYak_CAF1 39764 90 + 1
AAACGAAUCGCCUGGCAACUCGGGGUUGCACUAUUUAUGGGCCAUAACCAACUGGUUGCCUAGCAAUAUU----AUG-UUUUUAG----GCAUUGGAAG
...(.(((.((((((((((.....)))))..((((..(((((...((((....)))))))))..))))..----...-....)))----))))).)... ( -24.80)
>DroAna_CAF1 34448 97 + 1
AAACAAUUCGCGUGGCAACUUGGGGUUGGAUUGUUUAUUGGCUCCAACCAACUGGUUGCCUAGCGAUUCGGCAAGUG-UAUUUAAAGAAACAUU-UAAA
.......((((..(((((((...(((((((..(((....))))))))))....)))))))..))))......(((((-(.((....)).)))))-)... ( -31.00)
>consensus
AAACGAAUCGCGUGGCAACUCGGGGUUGUACUAUUUAUGGCCCAUAACCAACUGGUUGCCUAGCAACAUU____AUG_UUUUUAG____GCAUUGGAAA
.........((...((((((...((((((.(((....)))...))))))....))))))...))................................... (-16.06 = -15.62 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:14 2006