Locus 7232

Sequence ID 3R_DroMel_CAF1
Location 19,049,712 – 19,049,804
Length 92
Max. P 0.520922
window11710

overview

Window 0

Location 19,049,712 – 19,049,804
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 76.34
Mean single sequence MFE -8.52
Consensus MFE 0.00
Energy contribution 0.00
Covariance contribution 0.00
Combinations/Pair nan
Mean z-score -1.15
Structure conservation index -0.00
SVM decision value -0.02
SVM RNA-class probability 0.520922
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19049712 92 + 27905053
AAUUUAUUUGCUCUUUUUCAUAACAGCUAUCAUUUUGACCUUUAACGGUCUGCUUCUCUAUAUGAGCAUAUUAUCUAUCUAUUAUCUAUUCA
........(((((...........(((.........((((......)))).))).........)))))........................ ( -11.35)
>DroSec_CAF1 62517 88 + 1
AAUCUAUUUGCUCUUUUUUAUAGCAGCUAUCAUUUUGAGCUUUAACGGUCUGGUUCUCUUUAUUAGCAUAUUAUC----UAUUAUCUACUCA
........((((.........))))((((.......(((((..........))))).......))))........----............. ( -10.14)
>DroSim_CAF1 64285 87 + 1
AAUCUAUUUGCCCUUUUUU-UAGCAGCUAUCAUUUUGACCUUUAACGGUCUGGUUCUCUUUAUUAGCAUAUUAUC----UAUUAUCUACUCA
........(((........-..)))((((.......((((......)))).((....))....))))........----............. (  -7.80)
>DroEre_CAF1 65412 87 + 1
UAUCUACUU-AUCUUUUUCACAGCAGUUACGAUUUUGACCUUUAACGCCCAGGUUCUCUACAUGAACGCAUUAUC----UAUUAUCUAUACA
.........-............((.((((......)))).............((((.......))))))......----............. (  -6.30)
>DroYak_CAF1 66150 76 + 1
UAUCUAAUUAAUCUUUUUCACGGCACUUACGAUUGUGACCUU------------UCUCUAUAUAAACAUAUUAUA----UAUUAUCUAUACA
.....................(((((........))).))..------------....(((((((.....)))))----))........... (  -7.00)
>consensus
AAUCUAUUUGCUCUUUUUCAUAGCAGCUAUCAUUUUGACCUUUAACGGUCUGGUUCUCUAUAUGAGCAUAUUAUC____UAUUAUCUAUUCA
............................................................................................ (  0.00 =   0.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:53 2006