Locus 723

Sequence ID 3R_DroMel_CAF1
Location 2,570,444 – 2,570,562
Length 118
Max. P 0.692025
window1141

overview

Window 1

Location 2,570,444 – 2,570,562
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.72
Mean single sequence MFE -36.88
Consensus MFE -21.23
Energy contribution -22.65
Covariance contribution 1.42
Combinations/Pair 1.38
Mean z-score -1.53
Structure conservation index 0.58
SVM decision value 0.33
SVM RNA-class probability 0.692025
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2570444 118 + 27905053
CUACGGAUCUGCCCAGCUUU-UUUCAUGCCUUCGAGACCCCAAUCCCC-CGGCCAGGUAUGUUUUGGCCAUGAACGGGAAAGGUCUUGGUUUUUCCCGGGGUUUUCCGCGUCAGUUAUGA
...((((...((((......-.(((((......((........))...-.(((((((.....))))))))))))(((((((..(....)..)))))))))))..))))............ ( -37.40)
>DroSec_CAF1 34478 119 + 1
CUACGGAUCAGCCCAGCAUUUUUGCAUGCCUUGGAGACCCCAAUCCCC-CGGCCAGGUAUCUUUUGGUCAUGAACGGGAAAGACCUUGGUUUUUCCCGGGGUUUUCCGCGUUAGUUAUGA
....((......)).(((....)))((((...(((((((((.......-.(((((((.....)))))))......(((((((((....)))))))))))))))))).))))......... ( -44.10)
>DroSim_CAF1 34730 119 + 1
CUACGGAUCAGCCCAGCAUUUUUGCAUGCCUUGGAGACCCCAAUCCCC-CGACCAGGUAUCUUUUGGUCAUGAACGGGAAAGACCUUGGUUUUUCCCGGGGUUUUCCGCGUCAGUUAUGA
....((......))..(((..(((.((((...(((((((((.......-.(((((((.....)))))))......(((((((((....)))))))))))))))))).)))))))..))). ( -46.90)
>DroEre_CAF1 36754 118 + 1
CUACGGAUCACGCCAGCUUUUUUGCAAUCCUUCGAGACG-CGAUCCCC-CGACCAGGUAUGUUUUGGCCAUGAACGGGAACGGUGCUGGUUUUUCCCGGGGUUUUCCGCGUCAGUUAUGA
....((......)).((......))..........((((-(((..(((-(((((((...((((((.(.......).))))))...)))))......)))))..)..))))))........ ( -32.70)
>DroYak_CAF1 35681 106 + 1
CUGC----------AGCU--UUUGCAUGCCUUCGAGACC-CAAUAACG-CGGUUAGGUAUGGUUUGGCCAUGAACGGGAAAGAUUUUGGGUUUUCCAGGGGUUUUCCGCUUCAGUUAUGA
(((.----------(((.--....(((((((....((((-(......)-.)))))))))))((((......)))).((((((.((((((.....)))))).))))))))).)))...... ( -29.20)
>DroAna_CAF1 31230 96 + 1
-----------------------GCAGGCUUACGAAACCCCAAUCCUGAUAAUCAGGUAGAUAACUAGUAUGAACGG-AAUUCUGUUGGUUUUCCCCGGGGUUUUCCAAGCCAGUUAUGA
-----------------------...(((((..((((((((...((((.....))))..((.(((((......((((-....))))))))).))...))))))))..)))))........ ( -31.00)
>consensus
CUACGGAUCAGCCCAGCUUUUUUGCAUGCCUUCGAGACCCCAAUCCCC_CGACCAGGUAUGUUUUGGCCAUGAACGGGAAAGAUCUUGGUUUUUCCCGGGGUUUUCCGCGUCAGUUAUGA
.................................((((((((.........(((((((.....)))))))......(((((((((....)))))))))))))))))............... (-21.23 = -22.65 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:13 2006