| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,567,021 – 2,567,112 |
| Length | 91 |
| Max. P | 0.697757 |
| Location | 2,567,021 – 2,567,112 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 84.15 |
| Mean single sequence MFE | -16.27 |
| Consensus MFE | -12.84 |
| Energy contribution | -12.87 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2567021 91 - 27905053 ACACACUGAAGUUUUACGCAAAACCCGCAUCGCAAAAGUUGUGCCGGUUGAAACUAAAAAA---AAAAAACAA--ACAAAAAGUUAAGCCAG-----UUAC ....((((.(((((((......(((.((((.((....)).)))).))))))))))......---........(--((.....)))....)))-----)... ( -14.80) >DroSec_CAF1 30988 87 - 1 ACACACUAAAGUUCUACGCCAAACCCGCAUCGCGAAAGUUGUGCCGGUAGAAACCAAAA-------AAAAUAA--ACAAAAAGUUAUGCCAG-----UUAC .................((...(((.((((.((....)).)))).)))...........-------......(--((.....)))..))...-----.... ( -13.10) >DroSim_CAF1 31307 90 - 1 ACACACUAAAGUUCUACGCAAAACCCGCAUCGCGAAAGUUGUGCCGGUUGAAACCAAAAAA----AAAAAUAA--ACAAAAAGUUAUGCCAG-----UUAC .................(((.((((.((((.((....)).)))).))))............----.......(--((.....))).)))...-----.... ( -15.90) >DroEre_CAF1 32907 85 - 1 ACACACUAAAGUUCUACGCAAAACCCGCAUCGCGAAAGUUGUGCCGGUUGAAA-GCA--------AAAAAUUA--ACAAAAGGUUAAGCCAG-----UUAC ....(((..........((..((((.((((.((....)).)))).))))....-)).--------........--......((.....))))-----)... ( -18.00) >DroYak_CAF1 31524 86 - 1 ACACACUAAAGUUCUACGCAAAACCCGCAUCGCGAAAGUUGUGCCGGUUGAAACGAA--------AAAAAUAA--ACAAAAAGUUAAGCCAG-----UUAC .................((..((((.((((.((....)).)))).))))........--------.......(--((.....)))..))...-----.... ( -15.10) >DroAna_CAF1 27874 101 - 1 ACACACUAAAGUUCUACGCAAAGCCCGCAUCGCGAAAGUUGUGCCGGUUAAAAGCCAACAACAAAAAAUACAAAUACGAAGGGUUAAGCCACCUCAUUAAU .................((..(((((((((.((....)).)))).(((.....)))........................)))))..))............ ( -20.70) >consensus ACACACUAAAGUUCUACGCAAAACCCGCAUCGCGAAAGUUGUGCCGGUUGAAACCAAAA______AAAAAUAA__ACAAAAAGUUAAGCCAG_____UUAC .....................((((.((((.((....)).)))).)))).................................................... (-12.84 = -12.87 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:12 2006