| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,563,188 – 2,563,287 |
| Length | 99 |
| Max. P | 0.880644 |
| Location | 2,563,188 – 2,563,287 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 71.45 |
| Mean single sequence MFE | -29.47 |
| Consensus MFE | -16.25 |
| Energy contribution | -17.37 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.880644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2563188 99 + 27905053 UGGCCCUGUUUUUCUGGACGGGAA------GUGGCGAAGGCGCCGCCAUGCUGUGCCUCAUUUAAUGCAA-GGUAAAUUGCAUUGAUUUCGUGAUUUUUUUUUUUU ....(((((((....)))))))((------((.((((((((((.((...)).)))))....(((((((((-......))))))))).))))).))))......... ( -32.90) >DroSec_CAF1 28931 78 + 1 UGGUCCUGUUUUUCUGGACGGGAA------GUGGCGAAGGCGCCGCCAUGCUGCGCCUCAUUUGAUGCAA-GGUAAAUUGCAUUG--------------------- ...((((((((....)))))))).------.....((.(((((.((...)).)))))))....(((((((-......))))))).--------------------- ( -28.40) >DroSim_CAF1 29174 78 + 1 UGGCCCUGUUUUUCUGGACGGGAA------GUGGCGAAGGCGCCGCCAUGCUGCGCCUCAUUUGAUGCAA-GGUAAAUUGCAUUG--------------------- .((((((((((....)))))))..------((((((....))))))........)))......(((((((-......))))))).--------------------- ( -28.50) >DroYak_CAF1 29465 78 + 1 UGGCCCUGUCUUUCUGGACGGGAA------GUGGCGAAGGCGCCGCCAUGCUGCGCCCCAUUUGAUGCAA-GGUAAAUUGCAUUG--------------------- ....(((((((....)))))))((------((((....(((((.((...)).)))))))))))(((((((-......))))))).--------------------- ( -32.20) >DroMoj_CAF1 37747 91 + 1 UGGAACUGGACUUGGGGACGGGAGAAGGCUGUGGCUAUGGCG-------GCGGCG--CCGUUCGAUGCUAGGCUAAAUUGCACUGAUUUUUUGAUUAAUG------ ..((((.((.((((....)))).....(((((.((....)).-------))))).--)))))).....(((((......)).)))...............------ ( -25.90) >DroAna_CAF1 26309 91 + 1 UGGGU--UCUCCUCCGGACGGGAA------GUUGCGAAGGCGCCGCCAUGCUGCGCCUCAUUUGAUGCAA-GGUAAAUUGCAUUGAUUUCUUGAUUAAUG------ .(((.--.....)))...((((((------(((..((.(((((.((...)).)))))))....(((((((-......)))))))))))))))).......------ ( -28.90) >consensus UGGCCCUGUUUUUCUGGACGGGAA______GUGGCGAAGGCGCCGCCAUGCUGCGCCUCAUUUGAUGCAA_GGUAAAUUGCAUUG_____________________ (((.(((((((....)))))))................(((((.((...)).))))))))..((((((((.......))))))))..................... (-16.25 = -17.37 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:11 2006