Locus 720

Sequence ID 3R_DroMel_CAF1
Location 2,555,191 – 2,555,286
Length 95
Max. P 0.798465
window1138

overview

Window 8

Location 2,555,191 – 2,555,286
Length 95
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 71.89
Mean single sequence MFE -19.93
Consensus MFE -9.62
Energy contribution -9.15
Covariance contribution -0.47
Combinations/Pair 1.29
Mean z-score -1.79
Structure conservation index 0.48
SVM decision value 0.61
SVM RNA-class probability 0.798465
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2555191 95 - 27905053
UUUUUAAUAAGAUUUCCACCCAGCUCCU---CCGUUCCCAUCCUCAUCCCCAUACCCAU----CGCCGACUGCCGGCGAAAGGUGCACUCUGUUGGAAAUGA
...........(((((((...(((....---..)))................((((..(----(((((.....))))))..))))........))))))).. ( -20.60)
>DroPse_CAF1 29185 97 - 1
UUUUUAAUAAGAUUUUCCUUCAGUUU-----CCAGCCCCAUCCGCUGCUCUCUAGCCUCUCUAUAUUGUCUGCUGGCGAAAGGUGCACUCUGCUGGAAAUGA
......................((((-----(((((......((((..((.(((((..(........)...))))).))..))))......))))))))).. ( -24.50)
>DroSec_CAF1 21028 98 - 1
UUUUUAAUAAGAUUUCCACCCAGCCCCUACCCCAUCCCCAUCCCCAUCCCCAUCGCCAU----CGCCGACUGUCGGCGAAAGGUGCACUCUGUUGGAAAUGA
......................................(((..(((.......((((.(----(((((.....))))))..))))........)))..))). ( -19.56)
>DroSim_CAF1 21251 86 - 1
UUUUUAAUAAGAUUUCCACCCAGCCCCUACCACAUCCCCAUCCCC------------AU----CGCCGACUGCCGGCGAAAGGUGCACUCUGUUGGAAAUGA
...........(((((((..(((....((((..((....))....------------.(----(((((.....))))))..))))....))).))))))).. ( -19.20)
>DroEre_CAF1 22631 74 - 1
UUUUUAAUAAGAUUUCCACCCAGCCC------------------------CACACCCAU----UCCCGACUGCCGGCGAAAGGUGCACUCUGUUGGAAAUGA
...........(((((((..(((...------------------------..((((..(----(((((.....))).))).))))....))).))))))).. ( -18.70)
>DroYak_CAF1 21349 74 - 1
UUUUUAAUAAGAUUUCCACCCAGCCC------------------------CACACCCAU----CCUCGACUGUCGGCGAAAGGUGCACUCUGUUGGAAAUGA
...........(((((((..(((...------------------------..((((..(----(.(((.....))).))..))))....))).))))))).. ( -17.00)
>consensus
UUUUUAAUAAGAUUUCCACCCAGCCC_____CCAUCCCCAUCC_C_____CAUACCCAU____CGCCGACUGCCGGCGAAAGGUGCACUCUGUUGGAAAUGA
...........(((((((..(((..........................................(((.....)))(....).......))).))))))).. ( -9.62 =  -9.15 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:10 2006