| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,537,642 – 2,537,748 |
| Length | 106 |
| Max. P | 0.523168 |
| Location | 2,537,642 – 2,537,748 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 83.19 |
| Mean single sequence MFE | -17.21 |
| Consensus MFE | -11.50 |
| Energy contribution | -11.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2537642 106 - 27905053 ---AU----AGAAA-AAUUGA----AAAAUAAAAUUCACAUUCACUCCGCA-AGUCUUAAACGAACAAAAUGCAAUUUCUCAAUUGCAGCUGAAUUCGUUCCAGAAAACGGCCUGCCCC ---..----.(((.-...(((----(........))))..)))...(((..-..(((..((((((.....(((((((....)))))))......))))))..)))...)))........ ( -17.40) >DroPse_CAF1 9485 103 - 1 ---GC----AGAAAAGAUAGC----A----AAAAUUCACAUUCACUCUCCAAAGUCUCAAA-GAACAAAAUGCAAUUUCUCAAUUGCAGCUGAAUUCGUUCCAGAAAACGGCCUGCCCC ---((----((..........----.----...............................-........(((((((....)))))))((((..(((......)))..))))))))... ( -16.70) >DroWil_CAF1 3758 91 - 1 --------------------A----AAAAUGAAAUUCACAUUCACUCU-UG-AGUCUCAAACAA--GAAAUGCAAUUUCUCAAUUGCAGCUGAAUUCGUUCCAGAAAACGGCCUGCCCC --------------------.----.....((((((..((((...(((-((-.........)))--)))))).))))))......(((((((..(((......)))..))).))))... ( -16.00) >DroYak_CAF1 3704 110 - 1 ---AUACAUACAAAAAAUUGA----ACAA-AAAAUUCACAUUCACUCCGCA-AGUCUCAAACGAACAAAAUGCAAUUUCUCAAUUGCAGCUGAAUUCGUUCCAGAAAACGGCCUGCCCC ---..................----....-............((..(((..-..(((..((((((.....(((((((....)))))))......))))))..)))...)))..)).... ( -17.00) >DroAna_CAF1 2867 111 - 1 CAGGA----AGAAA-AAUACAACAAAAA--AAAAUUCACAUUCACUCCGCA-AGUCUCAAACGAACAAAAUGCAAUUUCUCAAUUGCAGCUGAAUUCGUUCCAGAAAACGGCCUGCCCC ((((.----.(((.-.............--....))).........(((..-..(((..((((((.....(((((((....)))))))......))))))..)))...))))))).... ( -19.47) >DroPer_CAF1 9519 103 - 1 ---GC----AGAAAAGAUAGC----A----AAAAUUCACAUUCACUCUCCAAAGUCUCAAA-GAACAAAAUGCAAUUUCUCAAUUGCAGCUGAAUUCGUUCCAGAAAACGGCCUGCCCC ---((----((..........----.----...............................-........(((((((....)))))))((((..(((......)))..))))))))... ( -16.70) >consensus ___GC____AGAAA_AAUAGA____AAA__AAAAUUCACAUUCACUCCGCA_AGUCUCAAACGAACAAAAUGCAAUUUCUCAAUUGCAGCUGAAUUCGUUCCAGAAAACGGCCUGCCCC ......................................................................(((((((....)))))))((((..(((......)))..))))....... (-11.50 = -11.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:08 2006