| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,535,668 – 2,535,761 |
| Length | 93 |
| Max. P | 0.685758 |
| Location | 2,535,668 – 2,535,761 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.83 |
| Mean single sequence MFE | -34.52 |
| Consensus MFE | -19.60 |
| Energy contribution | -19.73 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.685758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2535668 93 + 27905053 GGUACUCGC---CGUGCAGCGCCUGCUGCU---------------UGUUGUGCGGA---UUGUGGUGCGGCGAGGCGGCGAAUUCGAUAUCGUAUUUGCCGUAGUAGUCUUGCG .((((((((---((..(.(((.((((.((.---------------....)))))).---.))).)..)))))))(((((((((.((....)).)))))))))........))). ( -41.40) >DroVir_CAF1 1152 108 + 1 GAUAAUCGC---CGUGAAGUGGUUGUUGUUGCUGCUGUUGCUGUUGCUUGUGCGGG---UUGUGGUGCGGCGAGGCGGCGAAUUCAAUAUCGUAUUUGCCGUAAUAAUCCUGCG (((((((((---......)))))))))((.((.((....)).)).))....(((((---...((.(((((((((...((((........)))).))))))))).))..))))). ( -37.10) >DroPse_CAF1 7676 96 + 1 GAUACUCGCCCGCGUGCAGCGACUGUUGCU---------------UG---UGCGGAUUAUUGUGGUGCGGUGAGGCGGCGAAUUCAAUAUCGUAUUUGCCAUAAUAGUCCUGUG ......(((.((((.(((((....))))).---------------))---)).(((((((((((((((......)).((((........))))....))))))))))))).))) ( -31.70) >DroEre_CAF1 2239 93 + 1 GGUACUCGC---CGUGCAGCGUCUGCUGCU---------------UGUUGUGCGGA---UUGUGGUGCGGUGAGGCGGCGAAUUCGAUGUCGUAUUUGCCGUAGUAGUCCUGCG ....(((((---((..(.((((((((.((.---------------....)))))))---.))).)..)))))))(((((((((.((....)).))))))))).(((....))). ( -42.70) >DroAna_CAF1 1149 78 + 1 GAUAUUCGC---CGUGCAGCGCCUGC---------------------------------UUGUGGUGUGGUGAGUUGGCGAAUUCAAUAUCGUAUUUGCCGUAAUAGUCCUGCG (((((((((---((..(.(((.....---------------------------------.))).)..)))))))).(((((((.(......).)))))))......)))..... ( -22.50) >DroPer_CAF1 7723 96 + 1 GAUACUCGCCCGCGUGCAGCGACUGUUGCU---------------UG---UGCGGAUUAUUGUGGUGCGGCGAGGCGGCGAAUUCAAUAUCGUAUUUGCCAUAAUAGUCCUGUG ......(((.((((.(((((....))))).---------------))---)).(((((((((((((((......)).((((........))))....))))))))))))).))) ( -31.70) >consensus GAUACUCGC___CGUGCAGCGACUGCUGCU_______________UG___UGCGGA___UUGUGGUGCGGCGAGGCGGCGAAUUCAAUAUCGUAUUUGCCGUAAUAGUCCUGCG ....(((((...(((((.(((....((((......................)))).....))).))))))))))(((((((((.(......).)))))))))............ (-19.60 = -19.73 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:07 2006